BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0102.0005.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 168 4e-43 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 89 3e-19 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 67 2e-12 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 62 3e-11 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 168 bits (425), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 91/174 (52%), Positives = 114/174 (65%), Gaps = 15/174 (8%) Query: 77 LRKAVAADPTNSEYVANLATSVLK-QDRIDDSIALYDEAIKLNTDNKDARIGLANAGSXQ 135 L + + P + L +S DR DD++ ++++A L D+K A + N G+ Q Sbjct: 251 LLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKA--LEVDSKHA-LTYNNIGAIQ 307 Query: 136 F-----------FHDALALKPNYLTAQHNLALGQLLAGDLKEGWANHESRLEVKERSYVY 184 F AL L+PNY TA+HN+AL LL G LKEGW HESRL +ERS+VY Sbjct: 308 HDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVY 367 Query: 185 KLIHKLFGMIPKWDGKSSLKGKYILLMHEQGFGDSIQFVRYVHLLLAQGARVWL 238 +LIHKLF +IPKWDGKSSL GKYILLMHEQGFGDSIQF+RYV ++L QGARV L Sbjct: 368 RLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVAL 421 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 107/158 (67%), Gaps = 12/158 (7%) Query: 1 MSTRSSN----KPAHKNAQPNVKDLLAVRECLGLLDDHKVAEAKVLCAQVLKRAPNLVYA 56 MSTR ++ KPA + ++DLL VR+ L LLD K EAK LC VL R P LV+A Sbjct: 1 MSTRKNSNKHGKPATPPPKHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNPTLVFA 60 Query: 57 NHAWGLIAMHENDYVAAEAALRKAVAADPTNSEYVANLATSVLKQDRIDDSIALYDEAIK 116 NHA GL+AMHE + AEA LRKA+ ADP N+EY++NLA +VL QDRID++IALY+ AI+ Sbjct: 61 NHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR 120 Query: 117 LNTDNKDARIGLANA--------GSXQFFHDALALKPN 146 ++ D++ +RIGLANA S +F DA+ +PN Sbjct: 121 IDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPN 158 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 100/221 (45%), Gaps = 19/221 (8%) Query: 30 LLDDHKVAEAKVLCAQVLKRAPNLVYANHAWGLIAMHENDYVAAEAALRKAVAADPTNSE 89 L D + +A+ + + P+ + A G N A A +A+ P E Sbjct: 154 LHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFE 213 Query: 90 YVANLATSVLKQDRIDDSIALYDEAIKLNTDNKDARIGLANAGSX-----------QFFH 138 ++N + K R +++ YD A+ L+ D N GS + + Sbjct: 214 AISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWF---NRGSTLEQLYRFEEASESYR 270 Query: 139 DALALKPNYLTAQHNLALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWD 198 A ALKP+ +A N AL QL GD GW E+R ++ + M P W Sbjct: 271 RAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQF-----MQPLWL 325 Query: 199 GKSSLKGKYILLMHEQGFGDSIQFVRYVHLLLAQGARVWLD 239 G+ L+GK ILL EQGFGD++QFVRY LL A+GARV L+ Sbjct: 326 GEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILE 366 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 14/210 (6%) Query: 38 EAKVLCAQVLKRAPNLVYANHAWGLIAMHENDYVAAEAALRKAVAADPTNSEYVANLATS 97 +A L + L+R P H + + AA + +A+ D ++Y Sbjct: 131 QALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAGLV 190 Query: 98 VLKQDRIDDSIALYDEAIKLNTDNKDARIGLANAGSXQFFHD--------ALALKPNYLT 149 Q + ++++ YD+A+ L + DA + + H+ AL + Sbjct: 191 EHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDAD 250 Query: 150 AQHNLALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWDGKSSLKGKYIL 209 A NLAL L+ G L++ W +E R E + + Y+ IP W+G SSL GK IL Sbjct: 251 AHLNLALSLLVLGRLEQAWPLYEWRWEGRS-ADPYR-----HATIPAWNGGSSLAGKRIL 304 Query: 210 LMHEQGFGDSIQFVRYVHLLLAQGARVWLD 239 L EQG GD+IQF RYV L+L GA+V L+ Sbjct: 305 LWAEQGQGDTIQFSRYVALILQAGAQVVLE 334 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 31/144 (21%) Query: 93 NLATSVLKQDRIDDSIALYDEAIKLNTDNKDARIGLANAGSXQFFHDALALKPNYLTAQH 152 N+A + + RI+ + A +++A++ + D +A +G A+ L+ QH Sbjct: 182 NMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAH---------------MLLSQQH 226 Query: 153 NLALGQLLAGDLKEGWANHESRLEVKERSYVYKLIHKLFGMIPKWDGKSSLKGKYILLMH 212 EGW HE+R + E + + P+W ++GK +LL Sbjct: 227 -----------YAEGWRAHEARFGIAELAR-----RGIDSPRPRWRAGEPVRGKRVLLWA 270 Query: 213 EQGFGDSIQFVRYVHLLLAQGARV 236 EQG GD++QF RY+ L+ Q A V Sbjct: 271 EQGQGDTLQFARYIPLVAQQAAEV 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 671,300 Number of extensions: 24245 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 6 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)