BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0102.0001.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311393|ref|YP_003775485.1| 50S ribosomal protein L9 [Herba...   161   2e-41
gi|300311391|ref|YP_003775483.1| primosomal protein N [Herbaspir...    55   2e-09

>gi|300311393|ref|YP_003775485.1| 50S ribosomal protein L9
           [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  161 bits (408), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 108/120 (90%)

Query: 32  ISQRAARRATATAIAEFEAKRAELEKAAAEKLAAAQAQGEKLTGLTVKITQKSGVDGRLF 91
           I QR ARRAT  AIAEFEAKRAELEKAAAEKLAAAQAQGEKL G TV+++QK+GVDGRLF
Sbjct: 31  IPQRKARRATDAAIAEFEAKRAELEKAAAEKLAAAQAQGEKLAGATVEVSQKAGVDGRLF 90

Query: 92  GSVTNFDIADALTKQGFPVEKAQVRLPQGPLKIVGEHAVSVALHTDVVVDVTVAVAGDHA 151
           GSVTNFDIA+AL K+GF VEKAQVRLP GPLKIVGEH VSVALHTDVVVDVT+AV G+ A
Sbjct: 91  GSVTNFDIAEALGKKGFAVEKAQVRLPNGPLKIVGEHPVSVALHTDVVVDVTIAVKGEQA 150


>gi|300311391|ref|YP_003775483.1| primosomal protein N
          [Herbaspirillum seropedicae SmR1]
          Length = 99

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 1  VTAKLQHQSEQTEAGIKRLVEFEITAFAAGEIS 33
          VTA+LQHQSEQ EAG+KR VEFEI A AAGEIS
Sbjct: 26 VTARLQHQSEQVEAGMKRQVEFEIAALAAGEIS 58


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 238,853
Number of extensions: 5757
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)