BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0101.0006.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...    82   7e-17

>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 13  VAESPFWHAAQSAWYWVDIPRKLICR-QTLDGVSRQWQLPEMVACIAPDDGGGLIAGMHT 71
           + ESP WHA ++A YW+DIP K + R     G  ++W LPE    I     GGL+  + T
Sbjct: 21  LGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQGGLVVAIRT 80

Query: 72  GIFSVQLQDDGNVQLSRLAQPAGLQADQRFNDGRCDRQGRFWSGVM 117
           G+F +   D G + L  LA P    +  RFNDGRCD  GRFW G +
Sbjct: 81  GMFHLN-TDTGALTL-LLAAPYD-SSRIRFNDGRCDASGRFWCGTI 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 876,061
Number of extensions: 31513
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)