BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0051.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas...    94   6e-21
gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas...    74   1e-14
gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa...    72   2e-14
gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa...    71   5e-14
gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa...    69   2e-13

>gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 94.4 bits (233), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 60/83 (72%)

Query: 1  MSTPMINVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEG 60
          M+ P++ VS L KSF  H +L  +DL VA SQVVV+IGPSGSGKST LRC NGLE AE G
Sbjct: 1  MTEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG 60

Query: 61 SISICNQDLLVDGKMIADXLANL 83
          ++ +C + ++  G+M+ + + +L
Sbjct: 61 TVKVCGRPVVEGGRMMPEAMLDL 83


>gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase
          [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 50/83 (60%), Gaps = 7/83 (8%)

Query: 5  MINVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 64
          MI V++L K F    IL GID E+ A +VV +IGPSGSGKST LRC NGLE   +G    
Sbjct: 1  MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDG---- 56

Query: 65 CNQDLLVDGKMIADXLANLPAHR 87
             D+ ++G  + D   NL A R
Sbjct: 57 ---DIFIEGVKLNDPKVNLNALR 76


>gi|300313168|ref|YP_003777260.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 46/67 (68%)

Query: 3  TPMINVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSI 62
          + ++ +  L KSF  +++L+G+ L+V   Q+V IIG SGSGKSTLLRC NGLE  + G I
Sbjct: 2  SAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDI 61

Query: 63 SICNQDL 69
           +C  D+
Sbjct: 62 QVCGHDI 68


>gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 71.2 bits (173), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 66/144 (45%), Gaps = 17/144 (11%)

Query: 5   MINVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 64
           MI V ++ K F  H +L  + L VA  +VV +IGPSGSGKST+LRC NGLE  E G I I
Sbjct: 1   MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60

Query: 65  CNQDLLVDGK----------MIADXLANLPAHRITQLADAGNIDCNDGDLEQAQQR---- 110
             Q +  DG           M+       P   + +    G I  N   L +AQ R    
Sbjct: 61  DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVN--GLARAQARSEAM 118

Query: 111 -LAAKIADVMAQGVFPLVLGGGHE 133
            L  K+        +P  L GG +
Sbjct: 119 SLLDKVGLAARCDAYPAQLSGGQQ 142


>gi|300310829|ref|YP_003774921.1| amino acid ABC transporter
          ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 45/66 (68%)

Query: 4  PMINVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSIS 63
          P++ ++ + K F  +++L+GI L V   QVV IIG SGSGKST+LRC NGLE  + GSI+
Sbjct: 2  PIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSIT 61

Query: 64 ICNQDL 69
          +    L
Sbjct: 62 VAGHKL 67


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,368
Number of extensions: 24223
Number of successful extensions: 273
Number of sequences better than 1.0e-08: 14
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 14
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)