BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0050.p (201 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 249 8e-68 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 137 5e-34 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 130 6e-32 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 130 8e-32 gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 129 1e-31 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 249 bits (637), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 130/173 (75%), Positives = 155/173 (89%) Query: 29 KRLRYGICTAYVTFIRGTPLLVQLFLLFFGLPQFDILLPAFLCGVLGLGIYSGAYVSEIV 88 +R+ YG+CT Y+T +RGTPLLVQLFL FFGLP ++LPA++CG+LGLGIYSGAYVSEIV Sbjct: 49 RRVIYGLCTIYLTLVRGTPLLVQLFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIV 108 Query: 89 RGAIQSIDKGQMEAARSLGMSSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLT 148 RGAIQSI++GQMEAARSLG+ AMR +ILPQA VRMIPPLGNEFIALIKNSALVSLLT Sbjct: 109 RGAIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLT 168 Query: 149 IADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTSLALQRIEKHLRAGGAV 201 IADLMHEG+KIISV+YRSLE Y+A+AL+YL+LTS+T+L L+R+EK LR+ G V Sbjct: 169 IADLMHEGEKIISVTYRSLETYLAIALIYLLLTSVTTLILRRVEKVLRSEGRV 221 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 137 bits (346), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 122/209 (58%), Gaps = 31/209 (14%) Query: 16 LGLLVGLGRLDRSKR--LRYGICTA-------YVTFIRGTPLLVQLFLLFFGL------P 60 GL++G+GRL ++ +Y +C YV+F+RGTPL VQ+ L+ F L P Sbjct: 38 WGLVLGVGRLAEARHGFWKYFLCYCVQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINP 97 Query: 61 QFDILLP------------AFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAARSLGM 108 ++L AF VL + + SGAYVSEI R IQSID+GQ EA+RSLGM Sbjct: 98 SGGLILSGDLAREIRSHYGAFASAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGM 157 Query: 109 SSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLE 168 S +R ++LPQA RM+PPLGN IA++K+S+L S + +A+L + + + R E Sbjct: 158 SYLATLRRVVLPQAFRRMLPPLGNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWE 217 Query: 169 VYIAVALVYLVLTSLTSLALQRIEKHLRA 197 Y+ ++++Y ++T LAL + +HL A Sbjct: 218 PYLTISVIYWLIT----LALSALVRHLEA 242 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 130 bits (328), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 118/209 (56%), Gaps = 28/209 (13%) Query: 16 LGLLVGLGRLDRS---------KRLRYGICTAYVTFIRGTPLLVQLFLLFFGL------P 60 +GLLVG+ RL K +R+ + YV F RGTPL VQ+ L+ F + Sbjct: 36 IGLLVGMLRLAEVQHGPWKWPLKSMRW-LAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQ 94 Query: 61 QFDILLP------------AFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAARSLGM 108 + +L+ AFL G + L + +GAY+SEI R IQSI++GQ AA SLGM Sbjct: 95 EHGLLITGELARTIKQDYGAFLSGTVALSLNAGAYISEIFRAGIQSIERGQSYAAASLGM 154 Query: 109 SSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLE 168 + G MR ++LPQA RM+PPLGNE I L+K+S+LVS + +A+L + + + R E Sbjct: 155 NYGLTMRYVVLPQAFRRMLPPLGNEAITLLKDSSLVSAIGLAELAYAARTVAGTYARYWE 214 Query: 169 VYIAVALVYLVLTSLTSLALQRIEKHLRA 197 YI ++++Y +T +L + R+E A Sbjct: 215 PYITISVLYFSMTICLALVVARLESKYSA 243 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 130 bits (327), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 120/181 (66%), Gaps = 3/181 (1%) Query: 16 LGLLVGLGRLDRSKRLRYGICTAYVTFIRGTPLLVQLFLLFFGLPQFDILLPAFLCGVLG 75 LG ++ + R+ + + + YV+ +RGTPLLVQ+F++++GLP I GVL Sbjct: 37 LGFVLAVARIVPWRPIHWP-AAIYVSMMRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLT 95 Query: 76 LGIYSGAYVSEIVRGAIQSIDKGQMEAARSLGMSSGKAMRTIILPQAIVRMIPPLGNEFI 135 L + + AY+SE +RGAI + +GQ AA S+G++ + +R II+PQA+ +P + N I Sbjct: 96 LSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLI 155 Query: 136 ALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTSLALQ-RIEKH 194 +LIK+++LVS++T+ +LM +++I+V++R L +Y+A A +Y +L SL ALQ R+EK Sbjct: 156 SLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWML-SLCFEALQHRLEKK 214 Query: 195 L 195 L Sbjct: 215 L 215 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/182 (37%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 16 LGLLVGLGRLDRSKRLRYGICTAYVTFIRGTPLLVQLFLLFFGLPQF-DILLPAFLCGVL 74 +GLL GL R + L+ GI YV F+RGTP++VQ+ ++F LP I + V Sbjct: 36 VGLLAGLMRAYGNTLLK-GIGFGYVEFVRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVT 94 Query: 75 GLGIYSGAYVSEIVRGAIQSIDKGQMEAARSLGMSSGKAMRTIILPQAIVRMIPPLGNEF 134 + + SGAY++EIVRGA S+ +G EA +LG+ + + +I P AI RM+P +GN+F Sbjct: 95 SIVVNSGAYIAEIVRGAFLSVPRGLREAGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQF 154 Query: 135 IALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIAVALVYLVLTSLTSLALQRIEKH 194 I +K+++L ++ + +L +GQ+I++ ++R++E++IAVA +YL + + + AL+ EK Sbjct: 155 IVSLKDTSLFIVIGVGELTRQGQEIMAANFRAVEIWIAVAAIYLCMIGVMTYALRTFEKR 214 Query: 195 LR 196 +R Sbjct: 215 MR 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.144 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 414,832 Number of extensions: 12679 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 19 Length of query: 201 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 120 Effective length of database: 1,236,335 Effective search space: 148360200 Effective search space used: 148360200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)