BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0048.p (232 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311600|ref|YP_003775692.1| transcription regulator protein... 233 1e-62 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 81 7e-17 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 73 2e-14 gi|300313239|ref|YP_003777331.1| transcription regulator protein... 68 5e-13 gi|300309916|ref|YP_003774008.1| transcription regulator protein... 65 4e-12 >gi|300311600|ref|YP_003775692.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 233 bits (593), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 109/224 (48%), Positives = 155/224 (69%), Gaps = 2/224 (0%) Query: 8 RHGKPIAVRKLKELTGLPQSTLYRHLLPLKKWGLVQEQDN--FYAPGPLSVQLAWGFDHT 65 R GKP++ +++ + P ST+YRHL LKKWGL+QE N + PGP VQLAWGFD Sbjct: 69 RAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQN 128 Query: 66 SYLVSNAQPEMLQLAKKCGESVGLMVAVNDQVTCLDMVDSEQSLRCSFSKGRSHPLSRGA 125 S LVS ++ E+ L ++ GESVGL+VA+N Q+ C+ M +S+Q LRCSF+KGR+HPL +GA Sbjct: 129 SNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFTKGRAHPLLKGA 188 Query: 126 SAKAVLAHLPQAMAENIVARQLHGKDDDIARLHAELAAIRSQGYAVSEGEVDWGVWGVSA 185 SAK++LA +P+ + + ++ QL K +++A L +L IR +GY +SE EVD GVWGVS Sbjct: 189 SAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISESEVDLGVWGVSV 248 Query: 186 PVFYKPGQAAGAITLMAPAIRAEERQRELIAATVQAAATISERL 229 P+ G+ G ITLMAPA+R R++EL+ T+++A I R Sbjct: 249 PIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 292 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 5/193 (2%) Query: 13 IAVRKLKELTGLPQSTLYRHLLPLKKWGLVQEQDNFYAPGPLSVQLAWGFDHTSYLVSNA 72 + + ++ +LTGL ++ R+L+ L G ++ + ++ P+ ++L + H++ L Sbjct: 43 LTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIV 102 Query: 73 QPEMLQLAKKCGESVGLMVAVNDQVTCLDMVDSEQSLRCSFSKGRSHPLSRGASAKAVLA 132 QP + +LA GE+ V +DQ+ C+ V + Q + + G P A+ + +LA Sbjct: 103 QPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLA 162 Query: 133 HLPQAMAENIVARQ-----LHGKDDDIARLHAELAAIRSQGYAVSEGEVDWGVWGVSAPV 187 +LP A + I+AR D+ RL E+A R QGYA+ + E++ G+ ++ PV Sbjct: 163 NLPPAQLDAILARAQPEAITAHTITDVERLGLEIARARVQGYALVDQELELGLRTMAVPV 222 Query: 188 FYKPGQAAGAITL 200 G+ A+ + Sbjct: 223 RNFRGEVVAAMNI 235 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 7/218 (3%) Query: 1 VRKLKEXRHGKPIAVRKLKELTGLPQSTLYRHLLPLKKWGLVQEQDNFYAPGPLSVQLAW 60 +R + R IA ++ + TG+P++ + R L LK+ G N ++ P + L + Sbjct: 26 IRAFSDSRRSLTIA--QISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFSLRPKILTLGY 83 Query: 61 GFDHTSYLVSNAQPEMLQLAKKCGESVGLMVAVNDQVTCLDMVDSEQSLRCSFSKGRSHP 120 + ++ L +AQP + +++ GES L V + +V + + + + + + G P Sbjct: 84 SYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMSVALNTGSRLP 143 Query: 121 LSRGASAKAVLAHLPQ----AMAENIVARQLHGKD-DDIARLHAELAAIRSQGYAVSEGE 175 + +A+LAHLP+ A + + R L K RL LA +R+ GYAV + E Sbjct: 144 AYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRANGYAVIDEE 203 Query: 176 VDWGVWGVSAPVFYKPGQAAGAITLMAPAIRAEERQRE 213 ++ G+ ++ PV G A+ + A A R Q E Sbjct: 204 LEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQME 241 >gi|300313239|ref|YP_003777331.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 5/213 (2%) Query: 23 GLPQSTLYRHLLPLKKWGLVQEQDNFYAPGPLSVQLAWGFDHTSYLVSNAQPEMLQLAKK 82 G ++ YR++ L GL+ + YA GP ++L L+S ++ + L + Sbjct: 31 GYTPASAYRYVRELGNAGLLVKMPRGYAVGPKVIELDRHMTQFDPLLSASRDIVGDLVAQ 90 Query: 83 CGESVGLMVAVNDQVTCLDMVDSEQSLRCSFSKGRSHPLSRGASAKAVLAHL-PQAMAEN 141 G + + V + R +F +G L A+A+ +LA+L P+ + ++ Sbjct: 91 TGLELLISELYGSTVITILQESGSNDARLNFGRGTPMDLFHSATARVILAYLLPRQLRKH 150 Query: 142 I---VARQLHGKDDDIARLHAELAAIRSQGYAVSEGEVDWGVWGVSAPVFYKPGQAAGAI 198 A +L + + IR GY VSEGE+D G G++AP+F + + G+I Sbjct: 151 FDGASAEELRLVGSNWRDFSKVMLKIRKDGYCVSEGELDAGKTGIAAPIFDEKQRILGSI 210 Query: 199 TLMAPAIRAEERQRELIAATV-QAAATISERLA 230 TL R RE ++ + AA I+ R+A Sbjct: 211 TLAGNTERVNAFNREFLSGLITDAARKITARIA 243 >gi|300309916|ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 10/228 (4%) Query: 12 PIAVRKLKELTGLPQSTLYRHLLPLKKWGLVQE--QDNFYAPGPLSVQLAWGFDHTSYLV 69 P+ + +L L+G P+ T+YR L L G+V E ++ Y GP + LA S + Sbjct: 36 PLNIAQLAALSGYPRPTVYRILAALMAEGMVVENPRNKQYEVGPRLINLASRAWDRSDIR 95 Query: 70 SNAQPEMLQLAKKCGESVGLMVAVNDQVTCLDMVDSEQSLRCSFSKGRSHPLSRGASAKA 129 + A + QL E+V L V + + ++ ++S Q++R G L + KA Sbjct: 96 TTAIESLRQLRDLTRETVHLAVPSDHSMVYIEKLESPQAVRMDSRIGTRVTLYSSSVGKA 155 Query: 130 VLAHLPQAMAENIVARQLH------GKDDDIARLHAELAAIRSQGYAVSEGEVDWGVWGV 183 LA L +A E ++ R LH ++A L A++ R++GYA E + ++ Sbjct: 156 YLAGLEEAHRERLM-RTLHLQAFTANTHTELAALRADVEDTRARGYAEDREENEAQIFCY 214 Query: 184 SAPVFYKPGQAAGAITLMAPAI-RAEERQRELIAATVQAAATISERLA 230 A + G +++ P R + Q+ + +QA ATIS +LA Sbjct: 215 GAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVQPLLQACATISRKLA 262 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,591 Number of extensions: 29623 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 8 Length of query: 232 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 150 Effective length of database: 1,231,600 Effective search space: 184740000 Effective search space used: 184740000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)