BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0038.p
         (131 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310608|ref|YP_003774700.1| major facilitator superfamily p...    90   7e-20

>gi|300310608|ref|YP_003774700.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 89.7 bits (221), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 66/116 (56%)

Query: 1   VLTLAMGVRHGLGFWLQPISQAHGWTRETFSLAIALQNLMWGVFGPFAGMAADRYGTARV 60
           ++++A+G R   G ++ P+S  HG      + AIAL NL+WGV    AG   DR+G A V
Sbjct: 20  IMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQSLAGALTDRHGPAPV 79

Query: 61  IVFGALLYMGGLLWMALVDQPMLFAVGSGVLIGAALSCTAFGAISGIVGRSAPXAR 116
           + FGA+ Y  GL   AL     +  +G GV IG  +SCT+FG +   VGRS P  R
Sbjct: 80  VAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSFGVVLPAVGRSVPAER 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 475,931
Number of extensions: 20185
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 56
Effective length of database: 1,264,745
Effective search space: 70825720
Effective search space used: 70825720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)