BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0036.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase [Herbaspi...   313   1e-86
gi|300312682|ref|YP_003776774.1| iron-regulated protein [Herbasp...   238   4e-64
gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase [Herbaspi...   210   1e-55

>gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  313 bits (802), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 150/230 (65%), Positives = 180/230 (78%), Gaps = 4/230 (1%)

Query: 36  VLLHIPQILNPEQVALIRKQLDAADWTDGRATVGSQGARMKRNRQLSEHSAAGTELAHTV 95
           ++LHIP++L+ EQV  IR +L  ADW DGRATVG QGAR+KRNRQL EHS  G +L   +
Sbjct: 1   MMLHIPEVLSAEQVRHIRAELARADWVDGRATVGDQGARVKRNRQLPEHSPLGFKLGEII 60

Query: 96  LAALAIHPTFFAAALPARTMPPLFNRYEGGEQYGVHIDGAVRNVAGATPGAGYQLRTDVS 155
           L AL  +P FFAAALP +T+PPLFN YEGGE YG+H+DG+VRN+    P A   +RTDVS
Sbjct: 61  LEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNL----PNAVGSIRTDVS 116

Query: 156 STLFLSEPGDYDGGELVVHDTYGAHEVKLPAGDLILYPSTSRHEVTAVTRGCRISAFFWT 215
           STLFLS+P +YDGGELVV DTYG HEVKLPAGDLI+YPSTS H V  VTRG R+ +FFWT
Sbjct: 117 STLFLSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWT 176

Query: 216 QSMIRDDQRRGMLYELDQAIHALRRRHGDSDETVVLTGHYHNLLRLWAET 265
           QSM+RDD +R ML+ELD+ I  LR + GD++E + LTGHYHNLLR WAE 
Sbjct: 177 QSMVRDDWKRSMLFELDRNIFGLREKIGDTEEVLGLTGHYHNLLRQWAEV 226


>gi|300312682|ref|YP_003776774.1| iron-regulated protein
           [Herbaspirillum seropedicae SmR1]
          Length = 228

 Score =  238 bits (607), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/232 (49%), Positives = 157/232 (67%), Gaps = 6/232 (2%)

Query: 36  VLLHIPQILNPEQVALIRKQLDAAD--WTDGRATVGSQGARMKRNRQLSEHSAAGTELAH 93
           +L+ IPQ+L+ + +  +R  L+ A   W DGR T G QGA +K N+Q+ EHS    +   
Sbjct: 1   MLITIPQLLDTQALQTVRSLLEQAGEAWVDGRVTAGYQGAPVKFNQQIDEHSEVALQCQR 60

Query: 94  TVLAALAIHPTFFAAALPARTMPPLFNRYEGGEQYGVHIDGAVRNVAGATPGAGYQLRTD 153
            +++AL  HP F +AALP    PP+FNRY  G  +G H+DG+VR      P  G +LRTD
Sbjct: 61  IIVSALERHPRFISAALPNLIYPPMFNRYGEGMHFGAHVDGSVR----IHPHNGRKLRTD 116

Query: 154 VSSTLFLSEPGDYDGGELVVHDTYGAHEVKLPAGDLILYPSTSRHEVTAVTRGCRISAFF 213
           VS+TLFL++PGDYDGG+L + D+YGAH VKL AGD++LYP+TS H VT VTRG R++ FF
Sbjct: 117 VSATLFLADPGDYDGGDLQIDDSYGAHSVKLAAGDMVLYPATSLHTVTPVTRGVRLACFF 176

Query: 214 WTQSMIRDDQRRGMLYELDQAIHALRRRHGDSDETVVLTGHYHNLLRLWAET 265
           W QS++RDD +R +L+++D AI  L +   D+     L G YHNLLR W++T
Sbjct: 177 WVQSLVRDDGQRQLLFDMDNAIQRLNQTEADALARRTLVGCYHNLLRQWSDT 228


>gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  210 bits (534), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 152/229 (66%), Gaps = 7/229 (3%)

Query: 36  VLLHIPQILNPEQVALIRKQLDAADWTDGRATVGSQGARMKRNRQLSEHSAAGTELAHTV 95
           ++LH+ Q+L+ ++V   R  L+ A W DGR T GS    +K+NRQL E SA+   L   V
Sbjct: 1   MMLHLKQVLSTDEVTRARALLEQAQWIDGRVTSGSLPDTLKQNRQLPEQSASAVPLQQMV 60

Query: 96  LAALAIHPTFFAAALPARTMPPLFNRY-EGGEQYGVHIDGAVRNVAGATPGAGYQLRTDV 154
           LAAL  +  FF+AALP + + P+FNRY  GG+  G H+D A+R +       G ++RTDV
Sbjct: 61  LAALRRNTLFFSAALPRQIVTPMFNRYGAGGDHLGDHVDVAMRFMPD-----GRRVRTDV 115

Query: 155 SSTLFLSEPGDYDGGELVVHDTYGAHEVKLPAGDLILYPSTSRHEVTAVTRGCRISAFFW 214
           S TLFLSEP +Y+GGELVV D +    +KLPAGD++LYP+T+ H V  V  G R ++FFW
Sbjct: 116 SCTLFLSEPEEYEGGELVVADHWEDRHIKLPAGDMLLYPATTIHRVEPVRTGIRYASFFW 175

Query: 215 TQSMIRDDQRRGMLYELDQAIHALRRRHGDSDETVV-LTGHYHNLLRLW 262
           T+SM+R+ +RR +L+++D  + +LR R    D  VV L+  YHNLLR+W
Sbjct: 176 TESMVREGERRQLLFDMDCQLMSLRSRLAADDAAVVGLSATYHNLLRMW 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 890,773
Number of extensions: 37930
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)