BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0032.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   173   9e-45
gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   120   6e-29

>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  173 bits (438), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 1   VFGKADYKRFDNISVSLSHPDATVALISGGSEIDTHFSSPPFQYQALE-NKNVHKILSSY 59
           ++G A Y R D IS+++ HPDAT A+ISGG+EI  HF +PPFQ Q L  N N H +L SY
Sbjct: 167 LWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSY 226

Query: 60  DILGGPATFNVLYTTQKFHDDNPKTYKAFYNALVEAAQFIRANKAKAADTFIRVQKSKLA 119
           D+LGGP++  VLY T+KF  DNPKTY+AF +AL E A FIRAN  KAAD +++V K    
Sbjct: 227 DVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYLKVNKGNTD 286

Query: 120 PGFVRKIIEDPEIDFTVSPQRSYVYADKLYDIGVLKNRAA 159
              + +II++PE+ F ++PQ +Y  A+ ++ +G +KN+ A
Sbjct: 287 RKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPA 326


>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  120 bits (301), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 5/164 (3%)

Query: 2   FGKADYKRFDNISVSLSHPDATVALISGGSEIDTHFSSPPFQYQALENKNVHKILSSYDI 61
           FG  +Y + D ++VSLSHP+A  +L+SG +EI  HF+SPPF YQ  +   + ++L+S D+
Sbjct: 169 FGIENYAKLDPLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDV 228

Query: 62  LGGPATFNVLYTTQKFHDDNPKTYKAFYNALVEAAQFIRANKAKAADTFIRVQKSKLAPG 121
           LG   T +V++  + F D NPK  +AF  A  EA  +I  N+  AA+ F+RV K KL   
Sbjct: 229 LGH-ITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQE 287

Query: 122 FVRKIIEDPEIDFTVSPQRSYVYADKLYDIGVLKNRAAXSPARW 165
            V +++ DP  +FT +P     Y   +   G +K +    PA W
Sbjct: 288 EVEQMLADPGTEFTSTPVDIMQYVVFMSKAGTIKTK----PAVW 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,062
Number of extensions: 17364
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)