BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0028.p
         (688 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309406|ref|YP_003773498.1| potassium uptake protein [Herba...  1068   0.0  

>gi|300309406|ref|YP_003773498.1| potassium uptake protein
           [Herbaspirillum seropedicae SmR1]
          Length = 633

 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/633 (84%), Positives = 589/633 (93%)

Query: 56  MSSTQVRPNYSFRSQKLHIITLAALGVVFGDIGTSPLYALKECFSPEHGIAFSPDAVLGI 115
           MSS+   P+ S RS K H+ITLAALGVVFGDIGTSPLYALKECFSP+HGIAFSP AVLGI
Sbjct: 1   MSSSHTNPSLSLRSSKFHLITLAALGVVFGDIGTSPLYALKECFSPDHGIAFSPGAVLGI 60

Query: 116 ISMLFWSITIVVSLKYVLFVMRADNNGEGGVLALMALSLRTAVSGSPRAKLLMMLGVFGA 175
           ISMLFWSI+IVV++KYV+FV+RADNNGEGGVLALMALSLR+A+SGSPRAKLLMMLGVFGA
Sbjct: 61  ISMLFWSISIVVTIKYVMFVLRADNNGEGGVLALMALSLRSALSGSPRAKLLMMLGVFGA 120

Query: 176 CMFYGDVVITPAISVLSAVEGMDIAAPGTSHYVIPLTLVILIGLFLIQRHGTNLVGKLFG 235
           CMFYGDVVITPAISVLSAVEG++IAAP T+H VIPLTLVI++ LFLIQRHGT++VG+ FG
Sbjct: 121 CMFYGDVVITPAISVLSAVEGLEIAAPQTAHAVIPLTLVIVVILFLIQRHGTSVVGRFFG 180

Query: 236 PIMFLWFISLGALGLYHILKAPDILVAINPYYAVHFMIEHSLQAFIVLGSVVLVLTGAEA 295
           P+MFLWF SL  LGLY+I+KAP++LVAINPYYAVHFM EHSLQAFIVLGSVVLVLTGAEA
Sbjct: 181 PVMFLWFFSLALLGLYNIVKAPEVLVAINPYYAVHFMAEHSLQAFIVLGSVVLVLTGAEA 240

Query: 296 LYADMGHFGIRPIRFAWLYTVMPCLVINYFGQGANLLSNPEAIKNPFYLMVPDMLLVPMV 355
           LYADMGHFGI+PIR+AWL+TVMP L+INYFGQGANL++NP+AIKNPFYLM+PD L++PMV
Sbjct: 241 LYADMGHFGIKPIRYAWLFTVMPSLLINYFGQGANLIANPDAIKNPFYLMIPDPLVLPMV 300

Query: 356 VLATFATVIASQAVISGAFSLTSQAILLGFVPRMRILHTSEDERGQIYIPLINWMLLVLV 415
           VLAT ATVIASQAVISGAFSLTSQAILLGFVPRMRILHTSEDE+GQIYIPLINWMLLV+V
Sbjct: 301 VLATCATVIASQAVISGAFSLTSQAILLGFVPRMRILHTSEDEQGQIYIPLINWMLLVVV 360

Query: 416 VAVVLAFKKSDNLAAAYGVAVTTTMVITTMLAAVVMRAEWKWHPVLVTLVIGAFITVDLA 475
           VAVVLAFKKSDNLAAAYGVAVTTTMVITTML  VVMR  WKW    V   I  F+ VD+A
Sbjct: 361 VAVVLAFKKSDNLAAAYGVAVTTTMVITTMLLGVVMRHIWKWRMPAVVAAISCFLVVDVA 420

Query: 476 FFTANLLKIADGGWFPLLLGGAAFFLLMTWYSGRMLLRTRIKDDGIPLEPFVEGLLAHPP 535
           FF ANLLK+ +GGWFPL++GGAAFFLLMTWYSGRMLLR RIKDDGIP+EPF+EGLLAHPP
Sbjct: 421 FFAANLLKLTEGGWFPLVIGGAAFFLLMTWYSGRMLLRMRIKDDGIPIEPFIEGLLAHPP 480

Query: 536 HRVGGTAVFMTGNINTVPVALLHNLKHNRILHERVFFLKISIWDVPFVADEERLTLKDLG 595
           HRVGGTAVFMTGNI TVPVALLHNLKHNRILHERVFFLKISIWDVP+VAD ERLT+K+LG
Sbjct: 481 HRVGGTAVFMTGNIATVPVALLHNLKHNRILHERVFFLKISIWDVPYVADSERLTMKELG 540

Query: 596 GNVYLLRAAFGFKEAPEMHKVLDLTAAQFGMEFDLMDTSFFLARDTVVPSKLLGMSLWRE 655
           G+VYLLRAAFGFKEAPE+ KV+ LT  QFG  FDLMDTSFFLARDTVVPSKLLGMSLWRE
Sbjct: 541 GDVYLLRAAFGFKEAPEVQKVMTLTEQQFGHHFDLMDTSFFLARDTVVPSKLLGMSLWRE 600

Query: 656 QLFAWMYQNGAKPSDFFHIPANRVVELGTKVEI 688
           +LFAWMYQNGAKPSDFFHIPANRVVELGTKVEI
Sbjct: 601 RLFAWMYQNGAKPSDFFHIPANRVVELGTKVEI 633


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,957,299
Number of extensions: 77653
Number of successful extensions: 261
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 596
Effective length of database: 1,184,250
Effective search space: 705813000
Effective search space used: 705813000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 134 (56.2 bits)