BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0026.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309412|ref|YP_003773504.1| drug/metabolite transporter (DM...   223   1e-59
gi|300309524|ref|YP_003773616.1| ATP-dependent protease HslVU pe...    84   1e-17

>gi|300309412|ref|YP_003773504.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  223 bits (567), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 132/151 (87%), Gaps = 3/151 (1%)

Query: 16  HASWNALLKSSGDRLASLTIMTIGAGIGAIPLVLFTPLPHAAAWPYIILSAILHTGYNVF 75
           HASWNALLKSS DRLASL +MT+GAGIGAIPL+L+ P P  A+W YIILS +LHTGYN+F
Sbjct: 16  HASWNALLKSSHDRLASLALMTLGAGIGAIPLILWRPWPEPASWFYIILSGLLHTGYNLF 75

Query: 76  LIRAYRIGDFSQSYPIARGSSPMLVSIGAALFVGEQMSIYTWLGVALVSIGIISLANI-- 133
           LIRAYRIGDF QSYPIARGSSP+LV++GAA+F GEQ+ +YT +G+ LVS+GI+SLA++  
Sbjct: 76  LIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGLYTVIGILLVSLGIVSLADLRA 135

Query: 134 -KDRHNLSGPIAAFTTGAFIAAYTVTDGIGA 163
            + R +L+GP+AAF TGAFIAAYT+TDGIGA
Sbjct: 136 MRSREHLAGPLAAFATGAFIAAYTITDGIGA 166


>gi|300309524|ref|YP_003773616.1| ATP-dependent protease HslVU
           peptidase subunit [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 83.6 bits (205), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/45 (86%), Positives = 43/45 (95%)

Query: 170 FAQSAAKALQENTDLSPADIVKKSLVIAGELCIYTNLNHIIETLD 214
           +AQSAAKAL ENT+LSPA+IVKKSL IAGELCIYTNLNHIIETL+
Sbjct: 134 YAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETLE 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 536,109
Number of extensions: 19109
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)