BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0025.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspiril...   270   3e-74

>gi|300309413|ref|YP_003773505.1| methyl transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 232

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 143/164 (87%), Gaps = 2/164 (1%)

Query: 4   FDTGCGVGLSTLNLATQFPDHFVIGIDQSEDRLGRNTQWDGPPPGNLCFIRADLVDYWRL 63
            DTGCGVGLSTL+LA+Q PDHFVIGIDQS DRL R+T WDGP P NLCF+RADLVDYWRL
Sbjct: 65  LDTGCGVGLSTLHLASQHPDHFVIGIDQSADRLARHTHWDGPEPANLCFVRADLVDYWRL 124

Query: 64  LLEAKVFPARQYLLYPNPWPKIGHLARRWRWHGHAVFPSIIALGGVIECRSNWRIYVEEF 123
            L+A V PAR YLLYPNPWPKIGHLARRW+  GHAVFP+I+ALGG IECRSNWRIYVEEF
Sbjct: 125 ALQAGVRPARHYLLYPNPWPKIGHLARRWQ--GHAVFPAIVALGGQIECRSNWRIYVEEF 182

Query: 124 AAALTQLSGRPTACEAYATDTPITPFERKYLASGHALWRCRSEL 167
           AAAL+QLSG+    EA+  + PITPFERKYLASGHALWRC+++L
Sbjct: 183 AAALSQLSGQRIQAEAWRPERPITPFERKYLASGHALWRCQADL 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.141    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 656,080
Number of extensions: 28361
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)