BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0016.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310838|ref|YP_003774930.1| 16s rRNA processing protein [He...   193   6e-51

>gi|300310838|ref|YP_003774930.1| 16s rRNA processing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  193 bits (491), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/163 (58%), Positives = 121/163 (74%), Gaps = 5/163 (3%)

Query: 12  SVFGXKTWWLDKP--ELRDVEMMQAKSHSGDVVARLMGVAGRDAAEALKGAVVQIARSHF 69
           ++   KTWWL+K     +DV++MQ+K HSGDVVARL GVA R+AAEA+KG VV I+R HF
Sbjct: 42  ALLNAKTWWLEKSGQPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHF 101

Query: 70  PALSDGEFYWVDLIGLAVENMQGESLGVVSDLMDNGAHPILRVAVPTVPVEVQTEVQVEI 129
           PAL D EFYWVDLIG AVEN+QGE LGVVSD+MDNGAHPIL+V  P      + +   + 
Sbjct: 102 PALDDNEFYWVDLIGSAVENLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADA 161

Query: 130 QAERAGGK---AAAEILIPYVDQFVKTVSLADKKIVVDWGLDY 169
           + ++   +   AA+E+LIP+VDQFVKTV  ++KKI+VDW  DY
Sbjct: 162 KPKKGAKEKSAAASEMLIPFVDQFVKTVQQSEKKIIVDWDKDY 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 475,058
Number of extensions: 17185
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)