BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0011.p
         (683 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309416|ref|YP_003773508.1| two component sensor histidine ...  1044   0.0  

>gi|300309416|ref|YP_003773508.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 760

 Score = 1044 bits (2699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/674 (81%), Positives = 604/674 (89%), Gaps = 3/674 (0%)

Query: 1   MTRTLRYLLVVGGGVISILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVVLLLT 60
           M+RTLRYLLVVGGGVISILLFLLASASENSALF+QHYPWLL LN LAAI+LL LV+LLL 
Sbjct: 1   MSRTLRYLLVVGGGVISILLFLLASASENSALFEQHYPWLLFLNGLAAISLLGLVLLLLG 60

Query: 61  RLYKRYRRGKFGSRLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALES 120
           RLYKRYRRGKFGSRLLARLV++FAL+GILPGAVIYL+SVQFVSRSIESWFDVRMEAALES
Sbjct: 61  RLYKRYRRGKFGSRLLARLVLMFALVGILPGAVIYLMSVQFVSRSIESWFDVRMEAALES 120

Query: 121 GLNLGRNALDSSLTDLASRGRAMAQELSDMSESEQVTYLSRQRDQSMEITVVNANGQVQA 180
           GLNLGRNALDSSL+DL SR R MAQELSDMS+SEQVTYLSRQRDQ+MEIT+VN +GQV +
Sbjct: 121 GLNLGRNALDSSLSDLVSRARGMAQELSDMSDSEQVTYLSRQRDQNMEITIVNGSGQVMS 180

Query: 181 TVGGRIGVLTPTLPTAAMIRQARLSRGFSVVESDDSRPLNGESDADGNLRLHVVIAVPAS 240
           TVGG IG LTP LP+   +RQAR+SR FS VESDDSRP +G+SD+DGNLRLHVV+ VPA 
Sbjct: 181 TVGGSIGSLTPILPSTQAMRQARVSRAFSAVESDDSRPASGQSDSDGNLRLHVVVLVPAP 240

Query: 241 SKAMGLQNDSRFLQILQPVPDYLATNAETLRLAYSEYQQRSVARSGLRKIYIVTLTLTLL 300
           S+A+ LQ ++R+LQILQPVPDYLA+NAETLRLAY+EYQQRSV+RSGLRKIY+VTLTLTLL
Sbjct: 241 SRALALQGETRYLQILQPVPDYLASNAETLRLAYNEYQQRSVSRSGLRKIYLVTLTLTLL 300

Query: 301 LAIFGAIASAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNTMTR 360
           LAIF AIASAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFN MTR
Sbjct: 301 LAIFAAIASAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNIMTR 360

Query: 361 QLLEARTSVERNRAELENAKAYLESVLANMSAGVMVLDSEFCIVSVNDSVRRILGYDFNG 420
           QLLEARTSVE+NRAELENAKAYLESVLANMSAGVMVLD +F I+S NDSVRRILG+DF+ 
Sbjct: 361 QLLEARTSVEKNRAELENAKAYLESVLANMSAGVMVLDGQFNILSANDSVRRILGHDFSA 420

Query: 421 STGTPLHTIDGQALFAEAIIKAFSEQRA-HLADSAEDGLHWQQQIELPHRSSN--GAGDN 477
             GTPL TI+ QA FA+A+I+AFSEQ A H +DS  DGLHWQ+Q EL  +      + D 
Sbjct: 421 DIGTPLQTIEAQAPFAQAVIRAFSEQLAQHSSDSTPDGLHWQRQFELSRQPGAMLDSDDE 480

Query: 478 TETSKDGSKTILLARGSHLPVQSGVGYVVVFDDISKVISAQRSIAWGEVARRLAHEIKNP 537
                D  K  LLARGSHLPV++GVGYVVVFDDIS VISAQRSIAWGEVARRLAHEIKNP
Sbjct: 481 QGGKPDHDKLTLLARGSHLPVENGVGYVVVFDDISNVISAQRSIAWGEVARRLAHEIKNP 540

Query: 538 LTPIQLSAERLQMRLADKLLPADAAILDKSTTTIVNQVSAMKRMVDDFREYAKTPPAKPS 597
           LTPIQLSAERLQ RL+DKL+PADAAILDK TTTIVNQV+AMKRMVDDFR+YA+TPPAKP 
Sbjct: 541 LTPIQLSAERLQHRLSDKLMPADAAILDKGTTTIVNQVTAMKRMVDDFRDYARTPPAKPV 600

Query: 598 ALDLNALTEEILHLYLAGDGRDTIHARLAPDLPKVMGDATQLRQVIHNLLQNAQDAVAEN 657
           ALDLNAL EEIL+LYLAGDGRD IHARLAP + KVMGDATQLRQVIHNLLQNAQDAVA+ 
Sbjct: 601 ALDLNALIEEILNLYLAGDGRDAIHARLAPSMAKVMGDATQLRQVIHNLLQNAQDAVADE 660

Query: 658 GDVTPHIDVVTELV 671
           G+V P IDV+TE +
Sbjct: 661 GEVAPRIDVLTEQI 674


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,884,878
Number of extensions: 75388
Number of successful extensions: 367
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 591
Effective length of database: 1,184,250
Effective search space: 699891750
Effective search space used: 699891750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)