BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0007.p
         (351 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309417|ref|YP_003773509.1| proline rich signal peptide pro...   276   2e-75
gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspi...   177   1e-45

>gi|300309417|ref|YP_003773509.1| proline rich signal peptide
           protein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  276 bits (705), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 147/164 (89%)

Query: 188 QAAEIDVVQASLEATDDGYRLSTSYSFELNRSLEDALVRGVPLYFTTDVQLTRRRWYWFD 247
           +AAEI V QAS+E +D+GYRLS SY F+LNR LEDAL RGVPLYFTTDVQLTRRRWYWFD
Sbjct: 53  RAAEITVSQASIEHSDEGYRLSVSYDFDLNRGLEDALSRGVPLYFTTDVQLTRRRWYWFD 112

Query: 248 EVSISLSRTMRISYNVLTRQYHASTSGQLQQSFSTLEDAMSLIRRPPRWNIADKNTLKSG 307
           E S+S +RT+R+SYNVLTRQYH + SGQLQQSF+ L+DA++LIRRPPRW IAD NTLKSG
Sbjct: 113 ESSVSATRTVRLSYNVLTRQYHTAISGQLQQSFTNLDDALTLIRRPPRWLIADNNTLKSG 172

Query: 308 DVYNVGLRMRLDVAQLPKPFQINALNNSDWRLSSDWKEFTFKVE 351
           D YNVGLRMRLDVAQLPKPFQ+NALNNSDWRLSSDW EFT+K E
Sbjct: 173 DNYNVGLRMRLDVAQLPKPFQVNALNNSDWRLSSDWIEFTYKPE 216


>gi|300309418|ref|YP_003773510.1| RNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 424

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/131 (70%), Positives = 103/131 (78%)

Query: 1   VLHGLLTCALSLLLDEDHPAYDAFTVVNQAVEAAAADAEMSHAKGVVNAILRRFLRERAT 60
           VLHGLL  AL+LL++E+   YD+FTVV+QAV+AAA   EMS AKGVVNAILRR LRERAT
Sbjct: 72  VLHGLLVTALALLVNEEESGYDSFTVVDQAVQAAAISPEMSFAKGVVNAILRRLLRERAT 131

Query: 61  LLPQVEKTPPGAWNYPTWWIDRLKGAYPAQWQDILRAGNAAPPLTLRVNRRKSNAPDYLH 120
           L+PQ  KTPPG WNYPTWWIDRLK AYP QWQ IL AGN APPLTLRVNRR++    YL 
Sbjct: 132 LMPQATKTPPGTWNYPTWWIDRLKAAYPEQWQAILHAGNQAPPLTLRVNRRRTTVAQYLD 191

Query: 121 LLALNGIGARQ 131
            L   G+ ARQ
Sbjct: 192 TLQQAGMAARQ 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,005,021
Number of extensions: 37293
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,212,660
Effective search space: 321354900
Effective search space used: 321354900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)