BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0004.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...    71   4e-14

>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score = 71.2 bits (173), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 1   LLASMWHLVRTTPILRRRSAYHAMMFAAFSLYWTTSPLFLAGPTFNMSQKGIALFAFAGV 60
           L+ SMW L+R   +L+ R     +MFAAF+++W+   L L+   ++ S   I  F   GV
Sbjct: 201 LIKSMWCLLRDDKVLQVRGVLAMLMFAAFNVFWSALVLPLSASPYHFSHTVIGAFGLVGV 260

Query: 61  IGVIAAPIAGRVADRGWSRPATCVAMLAVAASFLMTHFWG-GGRESSLMVLLASAILLDF 119
           IG +AA  AGR +D+G ++  + V++     + L+  +W     ESSL  L+A  ILLD 
Sbjct: 261 IGALAASKAGRWSDQGHAQRTSAVSL-----AVLLLAWWPLSLMESSLWALVAGIILLDL 315

Query: 120 GVSANLVLSQRAIYALGGEXRGDHAALDVLVQHVEDGLG 158
           G  A  V +Q  I+    +       + +L   V  GLG
Sbjct: 316 GGQALHVTNQSLIFRSSPQAHSRLVGVYMLFYAVGSGLG 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 469,962
Number of extensions: 15380
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)