BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0002.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DM...   130   9e-32

>gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  130 bits (328), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 153/302 (50%), Gaps = 32/302 (10%)

Query: 2   WGLVFVTPLLLGDYPGVVLSLGRYVAFGLIA-LVPAWFDRRRIGLLNRQDWTVAFKLALV 60
           WGLVF+ P L   +    L+ GRY+A+GL A ++ A   RR +  L R +W     L+L+
Sbjct: 20  WGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPRLRRLLPHLGRDEWRALVWLSLL 79

Query: 61  GNLLYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESVAWSRLAPSLVILC 120
           GN++YY  LA+A+QL    + +++IG LP+ +S+  +   G    +V   +L PSL +  
Sbjct: 80  GNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEG----AVPLRKLVPSLALGL 135

Query: 121 LGLTLVNSSELERLRSTIGNMRSTTDYALGCIIAVCAIAAWTWYPIVNSRYLRTHTHINS 180
            G+  V    L    S  G  R   D  +G   A+ A+ +WT Y + NSR+L    HI++
Sbjct: 136 AGIACVAWQSLSV--SAAGQAR---DSVIGFFCALAALISWTTYAVGNSRWLARLHHISA 190

Query: 181 ITW----ATAQGLATLPMALIGFTLFGICGYASGSDYAFPLGPRPGV----FVVTMLVIG 232
             W        GL +L +A+  FT+               L P PG     F      + 
Sbjct: 191 HDWNLLIGVVTGLLSLFVAVPAFTVM--------------LQPHPGHDWLHFAAVSAGVA 236

Query: 233 LSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGTAPDLRVLAGVVLLCIG 292
           + AS  G   WNKAS+LLP  ++ Q+I+FETL ALLY FL     P L  +A +VL+   
Sbjct: 237 ICASLFGNACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTAS 296

Query: 293 VV 294
           V+
Sbjct: 297 VL 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,015,631
Number of extensions: 41910
Number of successful extensions: 210
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)