BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0018.p
         (56 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro...    67   3e-13
gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p...    65   8e-13
gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra...    63   6e-12
gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro...    61   2e-11

>gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 67.0 bits (162), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 38/50 (76%)

Query: 1   VIAFALAVWVARIVSVPLNKAVDIAQRVSGGDLSADIHAESKDETGQLMH 50
           VIA  LAV VAR VS PLN+AV +A+RV+ GDL+ DI A S DETG LMH
Sbjct: 202 VIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMH 251


>gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 65.5 bits (158), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 37/49 (75%)

Query: 2   IAFALAVWVARIVSVPLNKAVDIAQRVSGGDLSADIHAESKDETGQLMH 50
           I   LA++VARI++ PL  AVDIA+RV+ GDL A I  +SKDETGQLM 
Sbjct: 204 IGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQVQSKDETGQLMQ 252


>gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis
           transmembrane I protein [Herbaspirillum seropedicae
           SmR1]
          Length = 579

 Score = 62.8 bits (151), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 37/48 (77%)

Query: 2   IAFALAVWVARIVSVPLNKAVDIAQRVSGGDLSADIHAESKDETGQLM 49
           +A  LAVWV+R+++ PL +AV +AQRV+GGDL+  I    KDETGQL+
Sbjct: 203 LAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEPAGKDETGQLL 250


>gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 571

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 1   VIAFALAVWVARIVSVPLNKAVDIAQRVSGGDLSADIHAESKDETGQLMH 50
           V+A AL+ W+AR+V+ PL  AVDIA++V+ GDL+ADI    +DETGQL+ 
Sbjct: 202 VLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLE 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 164,569
Number of extensions: 4386
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 4
Length of query: 56
Length of database: 1,619,870
Length adjustment: 29
Effective length of query: 27
Effective length of database: 1,482,555
Effective search space: 40028985
Effective search space used: 40028985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)