BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0099.0014.p (152 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312564|ref|YP_003776656.1| outer membrane multidrug resist... 190 6e-50 gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspiri... 103 7e-24 gi|300313898|ref|YP_003777990.1| outer membrane drug efflux lipo... 83 1e-17 gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspiri... 81 4e-17 gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipo... 79 1e-16 >gi|300312564|ref|YP_003776656.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 190 bits (482), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 101/127 (79%), Positives = 113/127 (88%) Query: 23 TYGPAISLPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADVAVSERALSGRLN 82 + GPAISLPIF GGRLRGQFRSASASYDEAVANYD AVTQALQDVADV VSE+AL+GRL Sbjct: 367 SIGPAISLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALAGRLA 426 Query: 83 RTEAAADAARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLFALDVSMVR 142 +AAADAA +AYRIV NRY GGL YLDVLNAQDTL++NLR+LS LRSR+F LDV++VR Sbjct: 427 DVQAAADAAEEAYRIVSNRYNGGLATYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVR 486 Query: 143 ALGGGYQ 149 ALGGGY+ Sbjct: 487 ALGGGYR 493 >gi|300311423|ref|YP_003775515.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 103 bits (257), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 61/140 (43%), Positives = 93/140 (66%) Query: 11 LLSFLSAPNITTTYGPAISLPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADV 70 L SFLSAPN+ TTYGPAISLPIFEGGRLRGQ +ASA YD V +Y++ ++QAL+ ++D Sbjct: 339 LFSFLSAPNLQTTYGPAISLPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQ 398 Query: 71 AVSERALSGRLNRTEAAADAARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLR 130 V+ ++++ + + + + AA+ I Y+ GLT+YL+VL+AQ L + + L+ Sbjct: 399 VVTLQSVARQQEQAQQSVQAAQKNVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQ 458 Query: 131 SRLFALDVSMVRALGGGYQH 150 ++ A ++ ALGGG + Sbjct: 459 AQRLAAYAALQTALGGGIEE 478 >gi|300313898|ref|YP_003777990.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 82.8 bits (203), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 77/137 (56%) Query: 13 SFLSAPNITTTYGPAISLPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADVAV 72 + +AP++ + G + S +F+GGRLR + A Y+ VA+Y V A+Q+V D Sbjct: 334 TLFNAPSLLWSLGVSASQSLFDGGRLRAGVDFSQAGYEATVASYRRTVLTAMQEVEDGIT 393 Query: 73 SERALSGRLNRTEAAADAARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSR 132 AL +++ A +AR I +RYEGG T YLDV+ AQ +LL + R+ + L + Sbjct: 394 GLAALERAYAQSQLAIASARRVLEIASSRYEGGATPYLDVITAQQSLLNSERQAAQLMGQ 453 Query: 133 LFALDVSMVRALGGGYQ 149 + V +++ALGG +Q Sbjct: 454 RLLVSVFLIKALGGDWQ 470 >gi|300312015|ref|YP_003776107.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 495 Score = 80.9 bits (198), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 74/134 (55%) Query: 15 LSAPNITTTYGPAISLPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADVAVSE 74 +A + + +GPAI+LPIFEGG LR + ASY+ AVA Y+ + A DVA + Sbjct: 349 FTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELAVATYNKTLNDAYADVARQIAAI 408 Query: 75 RALSGRLNRTEAAADAARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLF 134 A +L A AA AY + R RY GL + L +L+AQ +L + + L+++ Sbjct: 409 HATERQLPIRSEALQAAERAYALARERYRLGLVSQLTLLSAQTGVLAQRQAMVALQAQRR 468 Query: 135 ALDVSMVRALGGGY 148 V++ +ALGGG+ Sbjct: 469 DQQVALYKALGGGF 482 >gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 497 Score = 79.3 bits (194), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 69/126 (54%) Query: 23 TYGPAISLPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADVAVSERALSGRLN 82 T+ P+I+LPIF G LR SA + D VANY+ A+ A ++VAD L RL+ Sbjct: 359 TFSPSINLPIFNAGSLRASLDSAKITRDIDVANYEKAIQTAFREVADALAVRATLDQRLD 418 Query: 83 RTEAAADAARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLFALDVSMVR 142 A A+ A+R+ RY G+ +YL L AQ TL + + L +LR + +++ + Sbjct: 419 AQGKATAASEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYK 478 Query: 143 ALGGGY 148 LGGG+ Sbjct: 479 VLGGGW 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 418,325 Number of extensions: 13759 Number of successful extensions: 83 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 13 Length of query: 152 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 75 Effective length of database: 1,255,275 Effective search space: 94145625 Effective search space used: 94145625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)