BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0013.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312565|ref|YP_003776657.1| multidrug resistance transmembr...   201   3e-53

>gi|300312565|ref|YP_003776657.1| multidrug resistance transmembrane
           efflux pump protein [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  201 bits (512), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/165 (64%), Positives = 122/165 (73%), Gaps = 2/165 (1%)

Query: 1   MSHSDSQAIQTIA--TTNDGAXGVAGNAPGKRKKLFTIFAGVVAVAAIGYGTYWYFIGSR 58
           MSHSDSQA  T+A           A  A  KRKKLF+IF GVVA+AAIGYG YWY IGSR
Sbjct: 1   MSHSDSQAAHTLAEEAKQRNEAASAAAAAQKRKKLFSIFGGVVAIAAIGYGAYWYLIGSR 60

Query: 59  YVSTDNAYTAVEISQVTPAVNGIVSEVKVVDTQYVHQGDVLVVIDSRDATLALAQAEADL 118
           YV TDNAYTA EI+ VTPA+NGIV+ V VVDTQ V +GDVLV ID  DA LA+ QA ADL
Sbjct: 61  YVETDNAYTATEIATVTPAINGIVAAVDVVDTQAVKKGDVLVRIDDADARLAVDQAAADL 120

Query: 119 GRAERRVQSYFANDTGFVAQVQAREAEQKRSAAQLLSGXAEQKRS 163
            R ER+V+ +FAND G  AQV AREAEQKR++AQLLS  A+ KR+
Sbjct: 121 DRTERKVKGFFANDAGLAAQVLAREAEQKRASAQLLSAQADLKRA 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 688,315
Number of extensions: 25939
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)