BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0012.p
         (100 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312565|ref|YP_003776657.1| multidrug resistance transmembr...   139   6e-35
gi|300312016|ref|YP_003776108.1| multidrug resistance A (translo...   101   1e-23
gi|300312487|ref|YP_003776579.1| multidrug resistance transport ...    70   4e-14

>gi|300312565|ref|YP_003776657.1| multidrug resistance transmembrane
           efflux pump protein [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  139 bits (349), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 78/94 (82%), Gaps = 1/94 (1%)

Query: 1   MKADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEM 60
           MKAD+YG ++EYHG V G++GGTGSAFAVIPAQNATGNWIKVVQRLPVRIS+D KELA+ 
Sbjct: 314 MKADLYGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQR 373

Query: 61  PLSVGLSMDVSIDTRGKSGQGSNSAENTAMNSSA 94
           PLSVGLSM V IDTRG+  Q  ++   +A N +A
Sbjct: 374 PLSVGLSMVVEIDTRGQI-QAGDAQRKSARNDNA 406


>gi|300312016|ref|YP_003776108.1| multidrug resistance A
           (translocase) transmembrane secretion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  101 bits (252), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 60/74 (81%)

Query: 3   ADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEMPL 62
           AD+YGS+++Y GTV+G + GTG AF+++PAQNATGNWIKVVQR+PVRI++D +++   PL
Sbjct: 276 ADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPL 335

Query: 63  SVGLSMDVSIDTRG 76
            +GLS   ++D  G
Sbjct: 336 RIGLSTTATVDIHG 349


>gi|300312487|ref|YP_003776579.1| multidrug resistance transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 397

 Score = 69.7 bits (169), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 54/89 (60%)

Query: 10  IEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEMPLSVGLSMD 69
           +E+HG V  ++ GTG+ F+++P QNATGN+ K+VQR+PVR++ID           GLS+ 
Sbjct: 308 VEFHGHVESLSPGTGAQFSLLPPQNATGNFTKIVQRVPVRVAIDATPEETRAFVAGLSVT 367

Query: 70  VSIDTRGKSGQGSNSAENTAMNSSAAKSP 98
           V ++T     +  +  E ++  ++  K P
Sbjct: 368 VEVNTIAAKDELRDLRERSSEANATRKEP 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.126    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 231,311
Number of extensions: 6870
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 3
Length of query: 100
Length of database: 1,619,870
Length adjustment: 69
Effective length of query: 31
Effective length of database: 1,293,155
Effective search space: 40087805
Effective search space used: 40087805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)