BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0010.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312566|ref|YP_003776658.1| multidrug resistance protein pr...   280   3e-77
gi|300312017|ref|YP_003776109.1| multidrug resistance B (translo...    86   2e-18

>gi|300312566|ref|YP_003776658.1| multidrug resistance protein
           protein [Herbaspirillum seropedicae SmR1]
          Length = 525

 Score =  280 bits (717), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/183 (73%), Positives = 157/183 (85%)

Query: 1   VAKLSTKVDPRKLVFIGVMWLGAVTLFRSFNTTDMSNFQIGWPLLMLGIGLPLFFVPLTG 60
           VAK+ST +D RKLV IGV WLG +T  R+FNTTDMS FQIGWPL + GIGLPLFFVPLTG
Sbjct: 343 VAKMSTTIDARKLVCIGVTWLGFITFLRAFNTTDMSFFQIGWPLFLQGIGLPLFFVPLTG 402

Query: 61  LALSSVEESETASAAGLMSFCRTMSGAIATSLVNTSWENKSIYYHAELAGMVDQFGDVSN 120
           LALSSV E ETASAAGLMSFCRTM+GAIATS+VNTSWEN + Y+HAEL+G+VD+ GD  +
Sbjct: 403 LALSSVNEEETASAAGLMSFCRTMAGAIATSIVNTSWENDATYFHAELSGLVDRGGDAIH 462

Query: 121 TLTQAGMSLDQARANIEQMLQSQSIMLSTNHIFMMAAISFGLAAAAVWFAPKPTRVADTS 180
           T+  +GMS +QA A++ Q +Q+Q++MLSTNHIFMMAA+SF LAA AVW APKPTRVADTS
Sbjct: 463 TMMASGMSAEQATASLAQTVQNQAVMLSTNHIFMMAAVSFSLAALAVWLAPKPTRVADTS 522

Query: 181 AAH 183
           AAH
Sbjct: 523 AAH 525


>gi|300312017|ref|YP_003776109.1| multidrug resistance B
           (translocase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 524

 Score = 85.9 bits (211), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 1   VAKLSTKVDPRKLV---FIG---VMWLGAVTLFRSFNTTDMSNFQIGWPLLMLGIGLPLF 54
           + +    VD RK+    FIG   V WL      RS     +    +  P L+ GI   +F
Sbjct: 334 IGRFLPLVDARKVATASFIGFAIVFWL------RSRYNLQVDQMTVILPTLLQGIPTAMF 387

Query: 55  FVPLTGLALSSVEESETASAAGLMSFCRTMSGAIATSLVNTSWENKSIYYHAELAGMVDQ 114
           FVPLT L LS +      +AAGL SF R   GA+ TS+  T+W N+SI +HA+L      
Sbjct: 388 FVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGTSISTTAWNNRSIMHHAQLTEHATP 447

Query: 115 FGD-----VSNTLTQAGMSLDQARANIEQMLQSQSIMLSTNHIFMMAAISF 160
           +       V+N  +  G++ +Q    +E+ +  Q+ ML  N IF ++A+ F
Sbjct: 448 YSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAAMLGINDIFYVSAVIF 498


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 484,541
Number of extensions: 15749
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)