BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0099.0002.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312491|ref|YP_003776583.1| 1-aminocyclopropane-1-carboxyla...   273   2e-74

>gi|300312491|ref|YP_003776583.1| 1-aminocyclopropane-1-carboxylate
           deaminase [Herbaspirillum seropedicae SmR1]
          Length = 355

 Score =  273 bits (697), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/289 (50%), Positives = 189/289 (65%), Gaps = 7/289 (2%)

Query: 6   LVLXK-FARYPLTFGPTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLI 64
           L L K F R  L F P+PI  L+RLSA LG  VE++AKR+D +SGLAFGGNK RKLE+L+
Sbjct: 2   LALDKLFPRKTLGFFPSPIHKLERLSAMLG--VEVWAKRDDVSSGLAFGGNKIRKLEWLV 59

Query: 65  PEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMS 124
            +AL  G DTLVSIG IQSN TRQV A AA +G+K   VQE W+ + D VYD+VGNI ++
Sbjct: 60  ADALAKGCDTLVSIGNIQSNHTRQVCAAAAAVGMKSYTVQETWLEWDDPVYDKVGNILLT 119

Query: 125 RIMGADVRLDAAGFDIGIRKSWEDAMESVRQSGGKPYPIPAGCSEHPKGGLGFVAFAEEV 184
           RIMG +  +   G+    + +W  A+E VR  GGKPY IPAG S+HP GGLG+  FA+EV
Sbjct: 120 RIMGGNPIMGGYGYSTTEKDTWARALEEVRAKGGKPYAIPAGASDHPLGGLGYANFADEV 179

Query: 185 RQQEEELGFKFDYIVTCAVTGSTQAGMVVGFAADGRADRVIGIDASAKPQQTFDQILRIA 244
             QE++LG  FD IV    TGSTQAGMVVGFAA  +  RVIGID +     T   + +IA
Sbjct: 180 AMQEQQLGVFFDNIVVATCTGSTQAGMVVGFAAQEKRRRVIGIDTADDEAMTRRAVTKIA 239

Query: 245 KNTAGLVELN----YDITEKDVVLDTRFGGPEYGLPNDGTLEAIRLCAR 289
            +T+ L+         + + D+ +   + GP YGLP++ T+ AIR  A 
Sbjct: 240 NDTSELIASKGGKRVIVRDADIEIIPDYSGPAYGLPSEQTIAAIRTAAE 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,192,284
Number of extensions: 50817
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)