BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0033.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme prote...   437   e-124

>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/259 (84%), Positives = 227/259 (87%), Gaps = 21/259 (8%)

Query: 20  GEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPTVTALKLMLDDNA 79
            EIIGQLWMAEFELRKTKG+E GPKGERQITNVVMMGMGEPLLNFEPTVTAL+LMLDDNA
Sbjct: 135 AEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNA 194

Query: 80  YGLSRRRVTLSTSGVVPMMDKLSQECAVALAVSLHASNDALRDSLIPLNKKYPLQELMAA 139
           YGLSRRRVTLSTSGVVPM+ KLSQEC VALAVSLHASNDALRDSLIPLN+K+PL+ELM A
Sbjct: 195 YGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLA 254

Query: 140 CKRYLEFA------------------XAHARELVALVQGGGDSKAAVPCKFNLIPFNPFP 181
           CKRYLEFA                    HARELVALV+ G   + A+PCKFNLIPFNPFP
Sbjct: 255 CKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEG---ETAIPCKFNLIPFNPFP 311

Query: 182 ESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKM 241
           ESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKM
Sbjct: 312 ESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKM 371

Query: 242 TEYQQKFGKDFGRIVEISG 260
            EYQ KFGKDFGRIVEISG
Sbjct: 372 AEYQNKFGKDFGRIVEISG 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 783,336
Number of extensions: 31327
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)