BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0027.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312257|ref|YP_003776349.1| 4-hydroxy-3-methylbut-2-en-1-yl...   282   2e-77

>gi|300312257|ref|YP_003776349.1| 4-hydroxy-3-methylbut-2-en-1-yl
           diphosphate synthase [Herbaspirillum seropedicae SmR1]
          Length = 420

 Score =  282 bits (721), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 154/188 (81%), Gaps = 9/188 (4%)

Query: 78  EAACRYDKPVRIGVNWGSL-------DQALLARIMDENAGRAE--PXTPEPGGDRTREVI 128
           E A R D P+ +G+    +         A L+ ++ E  G       TPEPGGDRT+EV+
Sbjct: 229 ELARRCDYPLHLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVV 288

Query: 129 VGQEILQTMGLRKFTPMVIACPGCGRTTSTVFQDLADKIQTYLREQMPQWKGVYPGVESM 188
           VGQEILQTMGLRKFTPMVIACPGCGRTTSTVFQDLADKIQT+LREQMP WKG YPGVE+M
Sbjct: 289 VGQEILQTMGLRKFTPMVIACPGCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAM 348

Query: 189 NVAVMGCIVNGPGESKHANIGISLPGTGESPAAPVFIDGEKRMTLRGERIAEEFQTIVLD 248
           NVAVMGCIVNGPGESKHANIGISLPGTGESPAAPVFIDGEK+MTLRGE IAEEFQ +VLD
Sbjct: 349 NVAVMGCIVNGPGESKHANIGISLPGTGESPAAPVFIDGEKKMTLRGEHIAEEFQKVVLD 408

Query: 249 YVQTHYGK 256
           YV++HYG+
Sbjct: 409 YVESHYGQ 416



 Score =  229 bits (583), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/118 (88%), Positives = 114/118 (96%)

Query: 1   VVRITVNSPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLNDYPDCARALSKYRINP 60
           VVR+TVN+PEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLL +YP+CA+ALSKYRINP
Sbjct: 66  VVRLTVNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKYRINP 125

Query: 61  GNVGKGAKRDSQFAQMIEAACRYDKPVRIGVNWGSLDQALLARIMDENAGRAEPXTPE 118
           GNVGKGAKRD+QFAQMIE AC+YDKPVRIGVNWGSLDQALLARIMDENAGRAEP + +
Sbjct: 126 GNVGKGAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWSAQ 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 909,015
Number of extensions: 41373
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)