BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0026.p
         (547 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herba...   813   0.0  
gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase r...    75   1e-14

>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/425 (90%), Positives = 406/425 (95%), Gaps = 3/425 (0%)

Query: 82  KGMNDILPADAPLWELFENTVHSVLKSYGFQQIRTPIVEPTALFSRGLGEVTDIVEKEMY 141
           KGMNDILPADAPLWELFENTV SVLKSYGFQQIRTPIVEPTALF+RGLGEVTDIVEKEMY
Sbjct: 14  KGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMY 73

Query: 142 SFTDSMNGDNLTLRPESTASVVRAALEHNLTYDGPKRLWYAGPMFRHERPQRGRYRQFHQ 201
           SFTDSMNGDNLTLRPE+TA VVRAALEHNLTYDGPKRLWY GPMFRHERPQRGRYRQFHQ
Sbjct: 74  SFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRHERPQRGRYRQFHQ 133

Query: 202 VGAEALGFTGPDIDAELIMMCQRLWDDLGLEDIRLELNSIGDAEERSKHRADLIAYFEQH 261
           VGAEA+GF+GPDIDAELIMMCQRLWDDLGL DIRLELNSIG+AEER+KHRADLIAYFEQH
Sbjct: 134 VGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERNKHRADLIAYFEQH 193

Query: 262 KELLDTDAQRRLHSNPLRILDTKNPTMQEMVNAAPKLLDYLGEESRAHFEGVQKILNHNN 321
           K+LLDTDAQRRLH+NPLRILDTKNP MQEMVNAAPKLLDYLGEESRAHFEGVQKIL HNN
Sbjct: 194 KDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRAHFEGVQKILRHNN 253

Query: 322 IPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMFGGKPTPACGFAMG 381
           IPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMFGGKPTPACGFAMG
Sbjct: 254 IPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMFGGKPTPACGFAMG 313

Query: 382 VERLLELMKASGEQYAPNQCDVYMVHQGDEAQLQSFVLAERLRGAGLDVVLHCASASAGG 441
           VERLLELMKASGEQYAPNQCDVY+VHQG++AQLQSFVLAERLR AGLDVVLHCAS++ GG
Sbjct: 314 VERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGLDVVLHCASSNGGG 373

Query: 442 SFKSQMKKADASGAAFAVILGEDEVKNATATVKTLR---AAEGESNQVTISFDGVTDYVV 498
           SFK+QMK+ADASGAAFAVI+GEDE+K  TATVK +R   A EG +NQ ++ FDGV DY+V
Sbjct: 374 SFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQNSLPFDGVVDYIV 433

Query: 499 EQIVG 503
           EQIVG
Sbjct: 434 EQIVG 438



 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 66/67 (98%), Positives = 66/67 (98%)

Query: 1   MQEMVNAAPKLLDYLGEESRAHFEGVQKILNHNNIPFTINPRLVRGMDYYNRTVFEWVTD 60
           MQEMVNAAPKLLDYLGEESRAHFEGVQKIL HNNIPFTINPRLVRGMDYYNRTVFEWVTD
Sbjct: 220 MQEMVNAAPKLLDYLGEESRAHFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTD 279

Query: 61  QLGSQGT 67
           QLGSQGT
Sbjct: 280 QLGSQGT 286


>gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase
           regulatory subunit [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 142/346 (41%), Gaps = 55/346 (15%)

Query: 82  KGMNDILPADAPLWELFENTVHSVLKSYGFQQIRTPIVEPTALFSRGLGEVTDIVEKEMY 141
           + + D+LP++A   E     +    + YG++ +  P++E       G G+ TD+     +
Sbjct: 8   ENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDL---RTF 64

Query: 142 SFTDSMNGDNLTLRPESTASVVRAALEHNLTYDGPKRLWYAGPMFRHERPQRGRY--RQF 199
              D ++G  L +R + T  V R    H L      RL YAG +  H RP  G +  R+ 
Sbjct: 65  KLVDQLSGRTLGVRADMTTQVARID-AHLLNRASVTRLCYAGSVL-HTRPT-GLHATREP 121

Query: 200 HQVGAEALGFTGPDIDAELIMMCQRLWDDLGLEDIRLELNSIGDAEERSKHRADLIAYFE 259
            Q+GAE  G  G + DAE+  +        G+  IRL+L  +G           +IA   
Sbjct: 122 IQIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRA-------IIA--- 171

Query: 260 QHKELLDTDAQRRLHSNPLRILDTKN-PTMQEMVN-----------AAPKLLDYLGEESR 307
                 +  A +R  +    +L  K+ P +QE+             A P L   +   +R
Sbjct: 172 ------NDAAAKRDEAQLFALLQAKDVPGLQEITATYQEGTRAALLALPNLYGDISVIAR 225

Query: 308 AH-----FEGVQKILN-----------HNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGS 351
           A        G+ + L+           H     TI+   +RG  Y++  +F       G 
Sbjct: 226 ARITLPALPGIAQALDELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVP--GL 283

Query: 352 QGTVCGGGRYDPLIEMFGGKPTPACGFAMGVERLLELMKASGEQYA 397
              V  GGRYD + E F G+  PA GF++ +  L  LM  +  + A
Sbjct: 284 PNAVVRGGRYDHVGEAF-GRARPATGFSLDLRELARLMPGAERKRA 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,722,969
Number of extensions: 73778
Number of successful extensions: 212
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 3
Length of query: 547
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,193,720
Effective search space: 545530040
Effective search space used: 545530040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)