BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0025.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312254|ref|YP_003776346.1| lipoprotein transmembrane prote...   237   1e-63

>gi|300312254|ref|YP_003776346.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  237 bits (604), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/313 (48%), Positives = 175/313 (55%), Gaps = 91/313 (29%)

Query: 9   SRRTASLAIKLSALAAVALLSGCSLFSSKKEVNPPAALVEFKQTLRTQTVWTASVGKAGS 68
           SRR   +A+KL+A+AAV  LSGCS FSSKK  NPPA LVEF Q LR QT W+ SVGKAG+
Sbjct: 17  SRRAGKMALKLAAVAAVVALSGCSWFSSKKNPNPPAPLVEFTQKLRVQTAWSVSVGKAGN 76

Query: 69  FRFSPVFAGGSVFAAGADGAVVRLNAATGQTVWRVNAGSSLTAGVGXRKDFSSESGLTLD 128
           F+FSPV+A GS                                                 
Sbjct: 77  FQFSPVYAAGS------------------------------------------------- 87

Query: 129 DRFVFAADDKGGVTEFARDTGTALWRNSKLAYRRLSPPIAVGKAVAVGDYQGYIHFLSRD 188
              +FAA + G V      TG  LWR                               +R 
Sbjct: 88  ---IFAAGNDGTVVRINAQTGQTLWR-------------------------------ART 113

Query: 189 DXDYQGYIHFLSRGVGSDGNVVAVVGEKGVVQAFDGN-GKSLWKAQAPSEVLSAPVVGSG 247
           D         L+ GVGSDG+ V VVGEKG +QAFD N GK  W AQA SEVLSAP VG G
Sbjct: 114 DMS-------LTAGVGSDGSTVVVVGEKGRIQAFDANTGKPTWNAQAASEVLSAPAVGEG 166

Query: 248 LVLVRSIDNRVTAFDAENGTRRWTVLRPLPTLTLRTAPGIVLDSQTAYVALPGGRLSALA 307
           LV++RSIDNRVTA+DA++G +RW V R +P+LTLR APGIV+ SQTA+VALPGGRLSALA
Sbjct: 167 LVVIRSIDNRVTAYDADSGNQRWMVQRNVPSLTLRNAPGIVIGSQTAFVALPGGRLSALA 226

Query: 308 LNNGGPRWEVAVG 320
           LNNGGPRWEV VG
Sbjct: 227 LNNGGPRWEVPVG 239



 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 61/76 (80%)

Query: 117 KDFSSESGLTLDDRFVFAADDKGGVTEFARDTGTALWRNSKLAYRRLSPPIAVGKAVAVG 176
           K+FSS+ G+TLDD +V+AAD  G VTEF+RDTG  +WRN +L  R+LS PI  GKAVAVG
Sbjct: 287 KEFSSDVGVTLDDSYVYAADVGGIVTEFSRDTGAVVWRNERLKNRQLSSPIGAGKAVAVG 346

Query: 177 DYQGYIHFLSRDDXDY 192
           DY+GYIHFLSR+D  +
Sbjct: 347 DYEGYIHFLSREDGSF 362


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 863,973
Number of extensions: 30477
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)