BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0018.p
         (559 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312250|ref|YP_003776342.1| transmembrane protease [Herbasp...   437   e-124
gi|300312249|ref|YP_003776341.1| HflC protein [Herbaspirillum se...   400   e-112

>gi|300312250|ref|YP_003776342.1| transmembrane protease
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/285 (81%), Positives = 250/285 (87%), Gaps = 9/285 (3%)

Query: 1   MLVSLFKKLGIKFSLNDPQWGRGSQDDNNRQNQNNGNNGKKPE------EGPPDLDQLWR 54
           MLVSLF+K+G+KFSLNDPQWGRGSQ+DN     N  N  K+PE      +GPPDLDQLWR
Sbjct: 1   MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNNDGPPDLDQLWR 60

Query: 55  DFNQRLSRLFGKRGGGGSDNGDGFNRGD---IKGAGIGAGVIAVIVAFLWLASGFFIVQE 111
           DFNQRLS LFG++GGGGS +G      +   +KGAGIG GVIAVIVAFLWLASGFFIVQE
Sbjct: 61  DFNQRLSGLFGRKGGGGSSDGGNGGGFNRGDVKGAGIGVGVIAVIVAFLWLASGFFIVQE 120

Query: 112 GQTAVVMTFGKYSHTTLPGFNWRWPYPVQSHEIVNVSQVRTAEIGYRSNAKNKQLKEALM 171
           GQTAVV TFG+YSHTTLPGFNWRWPYP+Q HEIVN+SQVRTAEIGYR N +NKQLKE+LM
Sbjct: 121 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM 180

Query: 172 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDQDETVRQVAETAIREIVGRSKMDFVLYEGR 231
           LTDDENIIDIQFAVQYKLKNAAEWLFNNRD D++VRQVAETAIREIVGRSKMDFVLYEGR
Sbjct: 181 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGR 240

Query: 232 EKVALDVGQLMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDXA 276
           EKVALDV Q MQQILDRYKSGVQITNVTMQGVQPPEQVQAAFD A
Sbjct: 241 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDA 285


>gi|300312249|ref|YP_003776341.1| HflC protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  400 bits (1027), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/226 (84%), Positives = 213/226 (94%)

Query: 321 MSRLITSIIVAIIAIWLVSTTIFVVEQRQSAIVFALGEVKQVVTEPGLHFKLPPPFQNVI 380
           M RL+TS+IVA++AIWL S+TIFVV+QR SAIVFALGEVKQV+TEPGLHFKLPPPFQNV+
Sbjct: 1   MGRLVTSVIVAVVAIWLASSTIFVVDQRSSAIVFALGEVKQVITEPGLHFKLPPPFQNVM 60

Query: 381 YIDKRIQTLDTPDADRFITAEKKNVLVDSFVKWRIVDPRLYFISFGGDERRAQDRLSQIV 440
           Y+DKRIQTLDTPDADRFITAEK NVLVD++VKWRIVDPRLYF+SFG DERR QDRLSQIV
Sbjct: 61  YLDKRIQTLDTPDADRFITAEKMNVLVDAYVKWRIVDPRLYFVSFGADERRTQDRLSQIV 120

Query: 441 KAALNEEITKRTVREVISGERGKVMDAIQRKVATEAKQIGAEIIDVRLRRVDYVDQINNS 500
           KAALN+EITKRTVREVIS +R  VMDAIQ +VA EAKQIG E+IDVRLRRVDYVDQINNS
Sbjct: 121 KAALNDEITKRTVREVISSQRNNVMDAIQARVANEAKQIGVEVIDVRLRRVDYVDQINNS 180

Query: 501 VYDRMKSERARVANELRSTGAAESEKIRADADRQRVVLLAEAYRDA 546
           V++RMKSER RVANELRSTGAAESEKIRADADRQRVV+LAEAYR++
Sbjct: 181 VFERMKSERVRVANELRSTGAAESEKIRADADRQRVVILAEAYRES 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,334,959
Number of extensions: 44096
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 559
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 469
Effective length of database: 1,193,720
Effective search space: 559854680
Effective search space used: 559854680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)