BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0098.0009.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312244|ref|YP_003776336.1| LysR family transcription regul... 464 e-132 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 196 1e-51 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 184 9e-48 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 163 2e-41 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 159 2e-40 >gi|300312244|ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 464 bits (1193), Expect = e-132, Method: Compositional matrix adjust. Identities = 217/290 (74%), Positives = 260/290 (89%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M++QS+E+R F+AVVEAG+LSAAAE+L QTTSGVSRAL+RLE+KLG SLLTRTTRRM+LT Sbjct: 1 MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ FLEQAR I+AAME A++SIR+R++KPVGKLRVDASAPFMLHC+VPHVG FR AYP Sbjct: 61 EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGAPK 180 DIEL+LTTNDRFIDLVE R DIAIRIGELQDS+LHA+ L+SARL ++ASP YL RHG P+ Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPE 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQIRPAFRASSGETIRQLAIHGQGIACLS 240 +V+ L++HQLIGF+QP+ LN+WPL+H GDRYQ RPA RASSGETIR LA+ GQGIACLS Sbjct: 181 SVEALEQHQLIGFSQPDQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 Query: 241 NFMSDADVAEGRLVRVLEKSHSAFRQQIHAVYYRNTRISRRISCFLDFFQ 290 NFMSDAD+A GRLVR+L ++ S +RQ+I AVYY +T++SRRISCFLDF Q Sbjct: 241 NFMSDADIAAGRLVRLLPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQ 290 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/284 (36%), Positives = 165/284 (58%), Gaps = 2/284 (0%) Query: 8 MRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLTEEGQVFL 67 M+ F+AVVE+GS AA +V Q+ VSR ++ LE+ LG LL RTTRR+ LT+EG+V+ Sbjct: 7 MQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRVYF 66 Query: 68 EQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYPDIELDLT 127 + +E++ ++ E + + S + G+LR+ A F + + P G F E +P I L++T Sbjct: 67 ARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLITLNIT 126 Query: 128 TNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGAPKTVKDLDK 187 +DR IDL+E+ D+AIRI L DS + A+PL R+ A+PE+L RHG P T +L Sbjct: 127 LSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTPAELRD 186 Query: 188 HQLIGFTQPEGLNNWPLQHEDGDRYQ--IRPAFRASSGETIRQLAIHGQGIACLSNFMSD 245 + I ++ G ++W +H GD Q +R ++G T R +AI GQGIA +F+ + Sbjct: 187 YPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDFIVN 246 Query: 246 ADVAEGRLVRVLEKSHSAFRQQIHAVYYRNTRISRRISCFLDFF 289 A + G+LV + E + + +H +Y T + ++ DF Sbjct: 247 AAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFL 290 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 184 bits (466), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 104/284 (36%), Positives = 160/284 (56%), Gaps = 2/284 (0%) Query: 7 EMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLTEEGQVF 66 E+ FIAV + GS AAE L + + VSR + LE +LG+ L+ RTTRR+ LTE G ++ Sbjct: 6 EIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALY 65 Query: 67 LEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYPDIELDL 126 LE+ ++IVAA+E A++ + S KP G LR++A F + + P F E +P+I LD+ Sbjct: 66 LERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDI 125 Query: 127 TTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGAPKTVKDLD 186 T +DR +D++++ D+AIRI L DSTL + LTS L + ASP YL HG P +L Sbjct: 126 TLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELA 185 Query: 187 KHQLIGFTQPEGLNNWPLQHEDGD-RYQIRPAFRASSGETIRQLAIHGQGIACLSNFMSD 245 +HQ I ++ + + W +G ++ ++G++ Q A+ G GI FM D Sbjct: 186 QHQTISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMID 245 Query: 246 ADVAEGRLVRVLEKSHSAFRQQIHAVYYRNTRISRRISCFLDFF 289 + G+LV +L + A I+AVY + ++ LDF Sbjct: 246 QYLRSGQLVSIL-GDYGAPELGIYAVYPSRAHLPAKMRAMLDFL 288 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 164/296 (55%), Gaps = 12/296 (4%) Query: 3 MQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLTEE 62 +Q + +F E GS +AAAE L T + VSR+++RLE +LG L RTTR++ LT E Sbjct: 7 VQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTRE 66 Query: 63 GQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYPDI 122 G+++ +Q ++ + + AE + + + P G LR+ P+ + ++P + F++AYP I Sbjct: 67 GELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQI 126 Query: 123 ELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGAPKTV 182 E++L+ +R +D VE+ D+AIR+G DS L A L A L L A+P YL R G P+++ Sbjct: 127 EVELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARRGQPRSI 186 Query: 183 KDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQIRPAFRASSGETIR-------QLAIHGQG 235 +L++H I F P P +D + F S + I AI G G Sbjct: 187 AELEQHDCIQFILPSSGRAMPWIFKDAQGRDM--DFHFKSRQRIHDDVLGCVNWAIAGGG 244 Query: 236 IACLSNFMSDADVAEGRLVRVLEKSHSAFRQQIHAVYYRNTR-ISRRISCFLDFFQ 290 + + +F++DA V G LV VL++ + +R + ++ Y + R +S R+ F++F + Sbjct: 245 LFQIYHFIADAAVRRGELVEVLQQ--AGYRTRRFSILYPHNRHLSARVRAFVEFLR 298 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 150/288 (52%), Gaps = 2/288 (0%) Query: 4 QSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLTEEG 63 Q ++ F V GSLSAAA + + R L LEE+LG LL RTTR++ LT EG Sbjct: 3 QFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEG 62 Query: 64 QVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYPDIE 123 FLE + I+A +E AE ++ RS + G+L + A A F + P + +F + D+ Sbjct: 63 AAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVT 122 Query: 124 LDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGAPKTVK 183 L L NDR D++ + D+AIRI L DS L + L ++A+P YLRRHG P++ Sbjct: 123 LTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPD 182 Query: 184 DLDKHQLIGFTQPEGLNNWPL-QHEDGDRYQIRPAFRASSGETIRQLAIHGQGIACLSNF 242 +L +H + + W L Q Y++ + GE + A+ G+G+A S + Sbjct: 183 ELMRHNCLAMSSEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMW 242 Query: 243 MSDADVAEGRLVRVLEKSHSAFRQQIHAVYYRNTRISRRISCFLDFFQ 290 A + G LV VL+K +A I+AV+ + + RI F+DF + Sbjct: 243 EVGAAIEAGELVTVLDK-FAAPAPSIYAVFAQRRHLPLRIRAFVDFLR 289 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 815,123 Number of extensions: 33657 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 74 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 74 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)