BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0008.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   340   6e-95

>gi|300312243|ref|YP_003776335.1| exported extracellular
           alpha-helical protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  340 bits (873), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 166/256 (64%), Positives = 203/256 (79%), Gaps = 4/256 (1%)

Query: 1   LKPGVKAVSGAALGGKSVFRFNTGGPAVIRHMP-SGEEIEEEQAFILFQNGAANQDTVRD 59
           L+   K+V+G ++GGK+ F+F+TGGPAV R  P SG +I E+QAFILFQNG A + +VR 
Sbjct: 100 LRAEAKSVAGNSVGGKTRFQFSTGGPAVSRVQPYSGAQIAEDQAFILFQNGPATEPSVRQ 159

Query: 60  HLYCEAEGVHERIPVKFVADATRKQLLQEFAKKIDPATVTIVQCQQRLPNDATVRLTWDK 119
           HLYCEAEG++ERIP K V +A RK LLQ+FAK +DPA+VTIVQCQQRLPN+A V+L WD+
Sbjct: 160 HLYCEAEGINERIPAKAVGEADRKALLQQFAKGVDPASVTIVQCQQRLPNEAHVKLVWDR 219

Query: 120 GIATPN--GIATTMPQTFKFKVRKEFTASLSCERENANAACSPIRPVTMSFSSPVPRKLA 177
           GIA  N   + T+ PQ F F+VR EF ASLSC+RENANAACSPI PVT+SFS+PVPRKLA
Sbjct: 220 GIAAANAPAVVTSQPQVFNFQVRSEFAASLSCQRENANAACSPILPVTLSFSAPVPRKLA 279

Query: 178 EAVELKSSSGKLKPFFEKGNTDETVYGLTFKPPFPENGEFTINLPSGFKDESGRTLSNAS 237
           E V + +++GK+KP  E G+ DE V  L FKPPFPE  +FTI+LPSGFKDE GRTL+NA 
Sbjct: 280 EQVVMNATTGKIKPTLE-GDKDEAVRELRFKPPFPEKSDFTISLPSGFKDEDGRTLANAG 338

Query: 238 AFPLKSRTAGYPPLAK 253
           AFPLKS  A +PPLAK
Sbjct: 339 AFPLKSALADFPPLAK 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,236
Number of extensions: 32897
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)