BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0007.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   344   8e-96

>gi|300312243|ref|YP_003776335.1| exported extracellular
           alpha-helical protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  344 bits (882), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 172/228 (75%), Positives = 188/228 (82%), Gaps = 4/228 (1%)

Query: 2   KTLNLPALSDAKDGERPFEVVGIPLKDPGFYVIELESQKLGASLLGKPAPMYVRTSTLVT 61
           K L+LPA  DAK+GE PFEV+GIPLKDPGFYV+ELESQKLGASLLGKP PMYVRTS LVT
Sbjct: 442 KKLDLPAQKDAKEGEWPFEVIGIPLKDPGFYVVELESQKLGASLLGKPQPMYVRTSALVT 501

Query: 62  NLSVHVKLGRENNAVWVTTLDTAKPVADAEVRVSNCKGDEIWRGKTNAIGVATIGKPLED 121
           NLSVHVKLGR N AVWVT LD AKPVADAE+RVSNC G +IW+GKTNA GVA +   LED
Sbjct: 502 NLSVHVKLGRANGAVWVTRLDDAKPVADAEIRVSNCDGAQIWQGKTNASGVAMM-PALED 560

Query: 122 VCA-MGQNQDGA--INGLFVSARKTDEKGRADMAFALTSWNDGIESWRFNLPTDRSASSS 178
            CA  G + D A  INGLFVSARKTDEKGR DMAFALTSWN+GIESWRFNLPTD   S++
Sbjct: 561 ACANRGYSPDNADKINGLFVSARKTDEKGRQDMAFALTSWNEGIESWRFNLPTDMDKSAT 620

Query: 179 ARAHTIFDRTLFRAGETVSMKHEFRLESMNGFALAGKDKLPTRVRIIH 226
            RA T+FDRTLFRAGETVSMKH  R E++ GF L  K+ LPTRVRI H
Sbjct: 621 VRATTVFDRTLFRAGETVSMKHVIRTETLQGFGLMRKEDLPTRVRISH 668



 Score =  310 bits (794), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 166/194 (85%)

Query: 229  LDKNGAGRTTVKSLPVVRTPRELLTEMTYSDPNGEIQTVSNVTAIWPSAVVIGIKGGDWV 288
            LDKNGAGR T+  LP ++ P+ELLTEMTYSDPNGE+QT+SNVT +WPSAVV+G++ G+WV
Sbjct: 834  LDKNGAGRATISKLPALQRPQELLTEMTYSDPNGEVQTISNVTPLWPSAVVVGLRTGNWV 893

Query: 289  SVKKKLALTMVALNAAGQPQADVPVEISGESKQTNSHRKRMVGGFYAYENTRSSQNLGTL 348
            SVKKKL LT V LN AGQPQA VPVEI G +++TNSHRKRMVGGFYAYEN  S Q+LG L
Sbjct: 894  SVKKKLTLTAVTLNTAGQPQAGVPVEIRGIARKTNSHRKRMVGGFYAYENDESKQDLGKL 953

Query: 349  CSGKTDKHGVLICEVSLTEAGNVELTASGKDANGNASYAKTSVWVTRQGELWFDGENQDR 408
            CSGK+D+HG+  C+  L+EAGNVEL AS KD NGNA+ A++SVWVT +GE+WFDGENQDR
Sbjct: 954  CSGKSDQHGMFTCDTELSEAGNVELIASAKDGNGNAAAARSSVWVTGRGEVWFDGENQDR 1013

Query: 409  IDILPEKKTYQPGE 422
            IDILPEKK YQPGE
Sbjct: 1014 IDILPEKKNYQPGE 1027


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,356,360
Number of extensions: 55816
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)