BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0006.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   184   4e-48
gi|300311909|ref|YP_003776001.1| response regulator consisting o...    86   2e-18

>gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  184 bits (467), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 89/96 (92%)

Query: 1    VRMPFRYATALVAVEREGIIDTQVVQLSGQDPTISLPVKGGFAPNVYVSVLAVRGRMREV 60
            VRMPFR ATALVAVEREG+IDT+VVQLSGQDPTIS+P+K  + PNVYVSVLAVRGRMREV
Sbjct: 1033 VRMPFRSATALVAVEREGVIDTRVVQLSGQDPTISVPMKAEYGPNVYVSVLAVRGRMREV 1092

Query: 61   PWYSFFTWGWKEPINWWHEFKEYQAPGTMVDLAKPA 96
            PWYSFF WGWKEPINWWHEF+EYQ PG +VDL+KPA
Sbjct: 1093 PWYSFFIWGWKEPINWWHEFREYQGPGPIVDLSKPA 1128


>gi|300311909|ref|YP_003776001.1| response regulator consisting of a
           CheY-like receiver domain and a Fis-type HTH domain
           [Herbaspirillum seropedicae SmR1]
          Length = 182

 Score = 86.3 bits (212), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 52/69 (75%), Gaps = 2/69 (2%)

Query: 92  LAKPANLDSILSALEHSAN--DASIDPAGADAAAPLSVERLEWEHIQRVLLENQGNISST 149
           LAKPAN+DSILSAL HS N   A+  P   + A+PLS+ERLEWEHIQRVL E++GNISST
Sbjct: 101 LAKPANVDSILSALSHSGNGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISST 160

Query: 150 ARXFKNRRR 158
           AR     RR
Sbjct: 161 ARALNMHRR 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 525,581
Number of extensions: 18429
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)