BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0005.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   364   e-102

>gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  364 bits (934), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/248 (69%), Positives = 209/248 (84%)

Query: 1    VPLNDSLTAFRIVAVAESGAGLFGTGSASIRSSQDVQVISGLPPLVREGDQFSAMVTVRN 60
            VPLND+LT+FRIVA+AE+G   FGTGS SIRS+QDVQVISGLPPLVREGD F+  VTVRN
Sbjct: 1270 VPLNDALTSFRIVAIAENGISDFGTGSISIRSTQDVQVISGLPPLVREGDSFNGAVTVRN 1329

Query: 61   TTTRAMQIRLNAKASSATPAATIALPDKDVAIPAGEAREVAWPVAVPADVSQLSWEIGAQ 120
            TTT  M I++ A+A   T A+T+ LP+++V I AG++ EV WPV  P  ++QL+WEI AQ
Sbjct: 1330 TTTHDMTIKVAARAQGGTAASTLTLPEREVKIAAGQSAEVMWPVQTPEGINQLAWEISAQ 1389

Query: 121  EQSASPAKDSIRFVQRVLPAIPVTVQQATLFQLDKASSMSVAQPADSLPGRGGLNISLKP 180
            EQ    A+D+++F QRV+PA+PVTVQQATLFQLDK +++ VA+PADSLPGRGGL ISLKP
Sbjct: 1390 EQGGQKARDAMKFTQRVVPAVPVTVQQATLFQLDKNAALDVARPADSLPGRGGLAISLKP 1449

Query: 181  SLAGGSEGIRKYFADYPFACLEQRTSKAIGLRDEALWQKIVADLPTYLDADGLAYYFPPS 240
            SLAGGS+ + +YF +YPFACLEQ+TSKAIGLRDEA WQKIVADLPTYLD DGLAYYFPPS
Sbjct: 1450 SLAGGSDALTRYFVNYPFACLEQKTSKAIGLRDEAAWQKIVADLPTYLDGDGLAYYFPPS 1509

Query: 241  ESNARRGA 248
            +S ARRG+
Sbjct: 1510 DSGARRGS 1517



 Score =  199 bits (505), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 101/111 (90%)

Query: 252  PTSAVLDWMAILQRVATIPERDKRLAEADQIIRSRLNYQGTRMGFSDEAGDYWWWLMASG 311
            PTS +LDW+ ILQRV  IP+R K+L EADQI+R+RLN+QGTRMGFS+E GDYWWWLM+SG
Sbjct: 1599 PTSGLLDWIGILQRVPAIPDRQKKLDEADQILRARLNFQGTRMGFSNEEGDYWWWLMSSG 1658

Query: 312  DSNANRLVLTMLNNPAWREDMPKLISGAIQRQQRGHWNTTTANVWGSLALE 362
            D+NANRL+L  LNNPAWREDMP+LI+GAI RQQRGHW+TTTANVWGSLALE
Sbjct: 1659 DANANRLILLELNNPAWREDMPRLIAGAIGRQQRGHWSTTTANVWGSLALE 1709


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,214,995
Number of extensions: 51517
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)