BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0098.0004.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312243|ref|YP_003776335.1| exported extracellular alpha-he...   287   4e-79

>gi|300312243|ref|YP_003776335.1| exported extracellular alpha-helical
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1938

 Score =  287 bits (734), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 133/186 (71%), Positives = 159/186 (85%), Gaps = 3/186 (1%)

Query: 1    LQTP---GTPPPGTLKFSQEGSGKPWITMQSLAAVPLKTPFSSGYRITKTVVAVEQKQQG 57
            LQ P   G    G+++ +QEG+GKPW+T+QSLAAVPLK PF++GYRIT+ V A+EQKQ G
Sbjct: 1751 LQLPWPEGNAQGGSVRLAQEGNGKPWVTLQSLAAVPLKQPFAAGYRITRKVEAIEQKQAG 1810

Query: 58   VYSRGDVLRVTLDVDAQTDMTWVVLSDPIPGGASLLGSGLARDSAITRSGEDDGRSRGSA 117
            VY+RGDVLRVTLD+DAQ +MTWVV+SDP+PGGA+LLGSGL RDSAI +  +D  R RG  
Sbjct: 1811 VYTRGDVLRVTLDIDAQAEMTWVVVSDPVPGGATLLGSGLGRDSAIAQGKQDAPRERGMG 1870

Query: 118  WLAYEERSFEGYRAYYERMPKGRSSISYTVRLNNAGEFSLPPTRVEAMYAPEMFGEIPNA 177
            WLAYEERSFE YRAYYE MPKGR+SISYTVRLNNAGEF++PPTRVEAMYAPEMFGE+PN 
Sbjct: 1871 WLAYEERSFEAYRAYYEAMPKGRTSISYTVRLNNAGEFNMPPTRVEAMYAPEMFGEVPNG 1930

Query: 178  RMSIKA 183
            ++ +KA
Sbjct: 1931 KLVVKA 1936


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,332
Number of extensions: 18016
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)