BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0017.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 137 9e-34 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 134 8e-33 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 131 5e-32 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 127 1e-30 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 125 3e-30 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 137 bits (345), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 108/176 (61%), Gaps = 1/176 (0%) Query: 87 VLEVKDVDIRFGGIQAVKSAQVDLHAGEIHALIGPNGAGKTTTFNLISGMFVPNHGTVKL 146 +L+ +V R+G AV +D+ AG +H++IGPNGAGKTT F+ ++G G++ + Sbjct: 5 ILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILV 64 Query: 147 NGEEIQGLTPGQICQRGLARSFQITNLFKGLSIYENLRLSLQARHA-SRFNMWKDIDSYP 205 GEE+ L + Q+GLARSFQ+T+LF LS+ ENLRL+ Q R + N WK + + Sbjct: 65 EGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFS 124 Query: 206 EIHAETDELMRFLGLKGIDLIEGGALSYGGQRLVDLGIALGSKPHVLLMDEPLAGL 261 A DEL+ L L+ + LS+G QR +++G+A+ +P V+ +DEP +G+ Sbjct: 125 AACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 134 bits (337), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 106/183 (57%) Query: 86 LVLEVKDVDIRFGGIQAVKSAQVDLHAGEIHALIGPNGAGKTTTFNLISGMFVPNHGTVK 145 ++LE +++ F G AV + + + G IHALIGPNGAGKTT FNL++ VP G + Sbjct: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 Query: 146 LNGEEIQGLTPGQICQRGLARSFQITNLFKGLSIYENLRLSLQARHASRFNMWKDIDSYP 205 NG +I P QI ++G+ RSFQI+ +F +S+ EN+R+ LQ + + F+ WK+ +S Sbjct: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESLK 123 Query: 206 EIHAETDELMRFLGLKGIDLIEGGALSYGGQRLVDLGIALGSKPHVLLMDEPLAGLAAAE 265 ++ +L+ + L L YG +R +++ L +P ++L+DEP G+ + Sbjct: 124 QLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHED 183 Query: 266 RER 268 +R Sbjct: 184 VDR 186 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 131 bits (330), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 87 VLEVKDVDIRFGGIQAVKSAQVDLHAGEIHALIGPNGAGKTTTFNLISGMFVPNHGTVKL 146 +L+V+ + FGG+ A++ L AG++ ALIGPNGAGK+T FNLI+G P+ G V L Sbjct: 3 LLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLL 62 Query: 147 NGEEIQGLTPGQICQRGLARSFQITNLFKGLSIYENLRLSLQARHASRFNMWKDIDSYPE 206 +G+ I GL +I +RG+ R+FQ++ F +++ ++++ +L + H + +W+ DS Sbjct: 63 DGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSL-- 120 Query: 207 IHAETDELMRFLGLKGIDLIEGGALSYGGQRLVDLGIALGSKPHVLLMDEPLAGLAAAER 266 + EL+ +G+ L+YG + V+L +AL + P +LLMDEP AG+A ER Sbjct: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 Query: 267 E 267 + Sbjct: 181 Q 181 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/183 (38%), Positives = 103/183 (56%) Query: 83 QDGLVLEVKDVDIRFGGIQAVKSAQVDLHAGEIHALIGPNGAGKTTTFNLISGMFVPNHG 142 Q L + + R+G A + G HALIGPNGAGKTT NL++G F P+ G Sbjct: 7 QADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSG 66 Query: 143 TVKLNGEEIQGLTPGQICQRGLARSFQITNLFKGLSIYENLRLSLQARHASRFNMWKDID 202 V GE+I L +RG+ R+FQI LF GL++ E++ L++Q R ++ ++ + Sbjct: 67 RVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVA 126 Query: 203 SYPEIHAETDELMRFLGLKGIDLIEGGALSYGGQRLVDLGIALGSKPHVLLMDEPLAGLA 262 S E+ E L+ L L L+YG QRLV++ +AL ++P VLL+DEP AG+ Sbjct: 127 SQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIP 186 Query: 263 AAE 265 +AE Sbjct: 187 SAE 189 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 125 bits (315), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/189 (39%), Positives = 107/189 (56%), Gaps = 11/189 (5%) Query: 87 VLEVKDVDIRFGGIQAVKSAQVDLHAGEIHALIGPNGAGKTTTFNLISGMFVPNHGTVKL 146 +LEV ++ +RFGG+ AV + + E+ A+IGPNGAGKTT FN ISG + P G + L Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 147 NGEEIQGLTPGQICQRGLARSFQITNLFKGLSIYENLRLSLQARHAS-RFNMWKDIDSYP 205 +G I Q+ Q+GL R+FQ LFK +++ ENL L A+H N+ + P Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENL---LVAQHQQVNTNLLSGLLKTP 124 Query: 206 EIH-AETDELMRF------LGLKGIDLIEGGALSYGGQRLVDLGIALGSKPHVLLMDEPL 258 +E + L R LGL + E G LSYG QR V++ + +KP +LL+DEP Sbjct: 125 AYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPA 184 Query: 259 AGLAAAERE 267 AGL E++ Sbjct: 185 AGLNPQEKQ 193 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 856,535 Number of extensions: 37088 Number of successful extensions: 434 Number of sequences better than 1.0e-08: 105 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 106 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)