BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0015.p (118 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 78 2e-16 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 74 5e-15 gi|300311563|ref|YP_003775655.1| branched-chain amino acid ABC t... 62 1e-11 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 55 1e-09 gi|300311880|ref|YP_003775972.1| amino acid ABC transporter perm... 53 6e-09 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 77.8 bits (190), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 1/101 (0%) Query: 9 QILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKY-LGFTGALII 67 QI NG+ +G Y L+A+GLS++F L VN +HGAF+ +GAYL ++T LGF +L+I Sbjct: 7 QIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGFWWSLLI 66 Query: 68 SPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQ 108 +PL+V L + ERF+LR Y+ +L T G+A+V ++ Sbjct: 67 APLVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQE 107 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 73.6 bits (179), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 2/95 (2%) Query: 17 GGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLG--FTGALIISPLLVAL 74 G +Y +++LGL++IF L V+N AHG Y +GA+LA YLG + LI++P+LV Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVMLIVAPILVGA 81 Query: 75 IGILFERFLLRRFYSADPILGLLLTFGLAMVAEQV 109 GI+ E+ +LR Y D + GLLLTFG+ ++ E + Sbjct: 82 FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGI 116 >gi|300311563|ref|YP_003775655.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 61.6 bits (148), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 49/76 (64%) Query: 28 SLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLGFTGALIISPLLVALIGILFERFLLRRF 87 +LI+S+ GV N AH +FY +GAY+A I LGF AL+I+PL+V + G L E + LR Sbjct: 26 TLIYSMMGVPNFAHASFYMLGAYVAYAIAGVLGFWPALLIAPLVVGVAGALVEHYGLRIV 85 Query: 88 YSADPILGLLLTFGLA 103 + + LL TFGL+ Sbjct: 86 HRYGHVPELLFTFGLS 101 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 55.5 bits (132), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 1 MQIVFLLEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLG 60 M + L Q+LNGL ++A GLSLIF + +VN AHG+FY +G YLA + LG Sbjct: 1 MTLASLAVQLLNGLADASAMFMVAAGLSLIFGVTRIVNFAHGSFYMLGLYLAYSLVDRLG 60 Query: 61 FT-----GALIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQ 108 T AL+++ L VA +G L E +LRR Y A + LL TF L +V + Sbjct: 61 ATPWGYWAALLLAALPVAALGALVELTILRRIYRAPELFQLLATFALVLVIKD 113 >gi|300311880|ref|YP_003775972.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 53.1 bits (126), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%) Query: 5 FLLEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVE-ITKYLGFTG 63 F LE L+GLL G Y L+ALG LI+ GV N A GA A V + K + Sbjct: 3 FFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLMEKGMPMWA 62 Query: 64 ALIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVXP 111 A+I + +++ L+G+ ERF+LR+ + PI + T GL E + P Sbjct: 63 AIIGAFVVMILVGLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGP 110 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.334 0.152 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 262,258 Number of extensions: 9203 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 14 Length of query: 118 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 44 Effective length of database: 1,269,480 Effective search space: 55857120 Effective search space used: 55857120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 124 (52.4 bits)