BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0097.0014.p (424 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 142 5e-35 gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 132 4e-32 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 130 1e-31 gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t... 116 3e-27 gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 94 3e-20 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 142 bits (358), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/412 (26%), Positives = 192/412 (46%), Gaps = 20/412 (4%) Query: 17 RRTVLKAGATVAATSAMGFPAIVRAQSDKIIIGHLTPRTGFLGPL-GEYAVMSITLAVEE 75 RR L A A +A+ P+ +A D I IG +T +G G+ V +I +A+ + Sbjct: 6 RRAALSATACALLGAAI-LPS-AQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIAD 63 Query: 76 QNKAGGLLGRQLTLISEDSVNPP-TASSKAQRLLERDGAAVLIGEISSASALGIAQVAQR 134 G + G+++ L+ D N A++KA+ +RDG +L+G ++SA++L + +VA Sbjct: 64 A--GGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGE 121 Query: 135 NKKLFMNTGCNSDELRGKSCNKYMFHIEAANSTYVKACGRSLLHDNLIKGKKLYALSADY 194 KK+F++ G + + CN Y + + G ++ GK Y L+ADY Sbjct: 122 KKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQG---GKSWYFLTADY 178 Query: 195 AFGHDLLRAAKSFVSANGGTIANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQITN 254 AFG L + V +NGG + VP +DFS +LL+ + +K ++ +AG + N Sbjct: 179 AFGTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVIN 238 Query: 255 FIKQYSEFGL--PFPIAGFGFDTAVAWGAGADNFAGTWPTT-WHHDVNAPSAKAFVAAFT 311 IK +EFG+ +AG G G + T W+ D+N +A+ + Sbjct: 239 AIKAANEFGVNKTMKLAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLN-DQTRAWANRYF 297 Query: 312 KKFGKPPENQAWGEYVAFRSIVQAITETKTLDTAKLIDYFEKGAQVDVLKARKGVYRAWD 371 K K P G+ A ++A+ + D K++DY K +++ GV R D Sbjct: 298 MKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKN-RINDFFTSNGVVRP-D 355 Query: 372 HQLLQEMYTVTPKPKAQVKDKWDFMLLGASVPGPNESLEVLAPTMQENACTF 423 +++ +MY + K ++ K WD+ L ++PG + T E+ C Sbjct: 356 GRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYM-----TKAESKCAL 402 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 14/373 (3%) Query: 37 AIVRAQSDKIIIGHLTPRTG-FLGPLGEYAVMSITLAVEEQNKAGGLLGRQLTLISEDSV 95 A+ + +D + IG +T +G + G + +I +AV + G +LG+ + +IS D Sbjct: 24 ALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVADF--GGTVLGKPIEVISADHQ 81 Query: 96 NPP-TASSKAQRLLERDGAAVLIGEISSASALGIAQVAQRNKKLFMNTGCNSDELRGKSC 154 N A+++A+ + G +LIG ++SA+AL + +V K++++N G + L + C Sbjct: 82 NKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKKRVYINIGAGTARLTNEEC 141 Query: 155 NKYMFHIEAANSTYVKACGRSLLHDNLIKGKKLYALSADYAFGHDLLRAAKSFVSANGGT 214 Y H E K +++ GK + L ADYAFGH L + V A+GGT Sbjct: 142 TPYTVHYEYDTVALAKGTASAVIKQG---GKSWFFLVADYAFGHSLANDTSAVVKASGGT 198 Query: 215 IANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQITNFIKQYSEFGLPFPIAGFGFD 274 + P ++D S +LL+ + +K ++ AG N IK EFG+ + G Sbjct: 199 VVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEFGVTKTMKLVGLL 258 Query: 275 TAV--AWGAGADNFAGTWPT-TWHHDVNAPSAKAFVAAFTKKFGKPPENQAWGEYVAFRS 331 + G N G T +W+ D + PS K F F +K K P Y A + Sbjct: 259 MVINDIHALGLANAEGLMMTDSWYWDKDEPSRK-FAERFFQKMKKMPSTHQAAAYSATTT 317 Query: 332 IVQAITETKTLDTAKLIDYFEKGAQVDVLKARKGVYRAWDHQLLQEMYTVTPKPKAQVKD 391 ++A+ T D+ K++ +K D KG RA D + + +MY K A+ K Sbjct: 318 YLKAVQAIGTDDSTKVMAQLKKTRIDDFY--NKGSIRA-DGRNIHDMYLYQVKSPAESKK 374 Query: 392 KWDFMLLGASVPG 404 WD++ L ++PG Sbjct: 375 PWDYLKLLETIPG 387 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/365 (27%), Positives = 174/365 (47%), Gaps = 13/365 (3%) Query: 44 DKIIIGHLTPRTGFLGPL-GEYAVMSITLAVEEQNKAGGLLGRQLTLISEDSVNPP-TAS 101 D I IG +T +G + G+ +I +A+ + G + G+++ L+ D N A+ Sbjct: 29 DVIKIGFITDISGVYSDIDGQGGAEAIKMAIADM--GGAINGKKIELLVADHQNKADVAA 86 Query: 102 SKAQRLLERDGAAVLIGEISSASALGIAQVAQRNKKLFMNTGCNSDELRGKSCNKYMFHI 161 SKA+ ++ G +LIG +S +AL A+VA KK++M G S L + C+ Y H Sbjct: 87 SKAREWFDQQGVDMLIGGTNSGTALASAKVAAEKKKVYMQIGAGSARLTNEECSPYTVHY 146 Query: 162 EAANSTYVKACGRSLLHDNLIKGKKLYALSADYAFGHDLLRAAKSFVSANGGTIANDELV 221 K G +++ GK + L+ADYAFGH L + V A+GGT+ Sbjct: 147 AYDTVALAKGTGSAVVKQG---GKSWFFLTADYAFGHSLESDTANVVKASGGTVVGAVKH 203 Query: 222 PTDATDFSPYLLKIRQAKPDLVISNLAGNQITNFIKQYSEFGL--PFPIAGFGFDTAVAW 279 P A+DFS +LL+ + +K ++ AG N +K +EFG+ +AG Sbjct: 204 PLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANEFGITKTAKLAGLLVFINDVH 263 Query: 280 GAGADNFAGTWPT-TWHHDVNAPSAKAFVAAFTKKFGKPPENQAWGEYVAFRSIVQAITE 338 N G + T +W+ D N + +AF + K P + +Y A ++ + E Sbjct: 264 SLTLKNTEGLYLTDSWYWDANEET-RAFAKRYFAVRKKMPSSLQAADYSAALQYLKVVKE 322 Query: 339 TKTLDTAKLIDYFEKGAQVDVLKARKGVYRAWDHQLLQEMYTVTPKPKAQVKDKWDFMLL 398 T D+ K++ K A+ + + + G RA D +++ +MY K +++ K WD+ L Sbjct: 323 IGTDDSDKVMAALRK-AKFNDMYQKNGYLRA-DGRVMHDMYLYQVKAQSESKYPWDYYKL 380 Query: 399 GASVP 403 ++P Sbjct: 381 VQTIP 385 >gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 397 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 102/389 (26%), Positives = 175/389 (44%), Gaps = 25/389 (6%) Query: 17 RRTVLKAGATVAATSAMGFPAIVRAQSDKIIIGHLTPRTGFLGPLGEYAVMSITLAVEEQ 76 RR LK A +AA A+ + + AQ++ I G P +G G++A + + LA++ Sbjct: 4 RRHFLKLSA-LAAPGALSYHDVF-AQAESIAFGCPVPMSGPFAANGKFADLGMKLALQ-- 59 Query: 77 NKAGGLLGRQLTLISEDSV-NPPTASSKAQRLLERDGAAVLIGEISSASALGIAQVAQRN 135 K G +LG+ + ++ D+ P TA K Q +E+ G G I S AL + + A + Sbjct: 60 -KYGKVLGKSTSYVNLDTEGKPATAVRKMQESIEK-GTRFFAGGILSGEALAMGKEADKA 117 Query: 136 KKLFMNTGCNSDELRGKSCNKYMFHIEAANSTYVKACGRSLLHDNLIKGKKLYALSADYA 195 +F+ T +DE+ G CN+ F ++ R LL + + K+ Y ++ Y Sbjct: 118 GAVFITTA-GADEITGSDCNRATFRWSVPTFGAIEQTVRPLL-EKMPNAKRWYTITPQYV 175 Query: 196 FGHDLLRAAKSFVSANGGTIANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQITNF 255 FG LL AAK+ G + +FS YL AKPD+++ G+Q ++ Sbjct: 176 FGEGLLSAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAIAAKPDVLLLLNFGSQSSDT 235 Query: 256 IKQYSEFGLPFPIAGFGFDTAVAWGAGADNFAGT---------WPTTWHHDVNAPSAKAF 306 ++Q FG+ +AW +G + F + + H ++AP K F Sbjct: 236 LRQAVSFGMKNNCT-----ILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEF 290 Query: 307 VAAFTKKFGKPPENQAWGEYVAFRSIVQAITETKTLDTAKLIDYFEKGAQVDVLKARKGV 366 V P G Y+ + I+ AI + + D +I E G + + L + + Sbjct: 291 VKLVNDNLKIDPNYSLAGSYICTKIILDAIIKANSTDPKAVIAAME-GMKYEGLTGSEEI 349 Query: 367 YRAWDHQLLQEMYTVTPKPKAQVKDKWDF 395 R DHQ+++ Y + K KA++ +K D+ Sbjct: 350 -RKGDHQVIKNYYLLKGKAKAKMANKNDY 377 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 100/400 (25%), Positives = 172/400 (43%), Gaps = 25/400 (6%) Query: 16 GRRTVLKAGATVAATSAMGFPAIVRAQSDKIIIGHLTPRTGFLGPLG-EYAVMSITLAVE 74 GR A A + +A PA + ++ + IG LT +G +G + +V++ +AVE Sbjct: 7 GRSLTAAAVACTVSLAATAIPAWAQ-DANTVKIGVLTDMSGPYSAMGGQGSVVAAKMAVE 65 Query: 75 E--QNKAGGLLGRQLTLISEDSVNPP-TASSKAQRLLERDGAAVLIGEISSASALGIAQV 131 + +N+ G+ ++ ++S D+ N P ++A+ L+RD + +S+ AL + ++ Sbjct: 66 DCLKNECKGM---KIEILSADNQNKPDVGVTRAREWLDRDKVEAIADLTNSSVALAVQKL 122 Query: 132 AQRNKKLFMNTGCNSDELRGKSCNKYMFHIEAANSTYVKACGRSLLHDNLIKGKKLYALS 191 + + M +G + L C FH + +L + K Y ++ Sbjct: 123 IKDKGGIAMYSGPATGALTTAECAPNGFHWMFDTYSQAAGAAAALTK---LGNKSWYFVT 179 Query: 192 ADYAFGHDLLRAAKSFVSANGGTIANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQ 251 DYAFGH L + A V ANGGT+ P +A+DFS +LL+ + +K ++ G Sbjct: 180 VDYAFGHSLEKDASDVVKANGGTVVGSVRHPLNASDFSSFLLQAQASKAQVIGLADGGTD 239 Query: 252 ITNFIKQYSEFGLP------FPIAGFGFDTAVAWGAGADNFAGTWPTTWHHDVNAPSAKA 305 + N IKQ F + + F D A T W +D +A Sbjct: 240 VVNAIKQARSFAVGGKDQRLVALLVFLSDVHALGLEAAQGLVYTDGFYWDYD---EQTRA 296 Query: 306 FVAAFTKKFG--KPPENQAWGEYVAFRSIVQAITETKTLDTAKLIDYFEKGAQVDVLKAR 363 F F +F KP QA G Y + ++A KT D + + D + R Sbjct: 297 FSKRFESQFKNIKPTMVQA-GVYSSVYQFLKARAAAKTSDWKVVAQKMREIPIADAV-MR 354 Query: 364 KGVYRAWDHQLLQEMYTVTPKPKAQVKDKWDFMLLGASVP 403 R D +++ +MY K A+ K WD++ L + +P Sbjct: 355 NASIRP-DGRVIHDMYLYQVKTPAESKGPWDYLKLLSVIP 393 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,244,285 Number of extensions: 49043 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 18 Length of query: 424 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 336 Effective length of database: 1,203,190 Effective search space: 404271840 Effective search space used: 404271840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)