BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0097.0010.p
         (394 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311513|ref|YP_003775605.1| beta-lactamase class C protein ...    68   1e-12

>gi|300311513|ref|YP_003775605.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 142/354 (40%), Gaps = 65/354 (18%)

Query: 16  AQSPAPAPVA--FAPLEPTLTAALVQYKLPALAAAVVQDGRIIAAGAVGTRKVGSGIAVT 73
           AQ  AP+P+    A ++  +   L  Y +P  + A+   GR++     G     +   VT
Sbjct: 36  AQETAPSPLQGLEARVDAQMGRLLAAYPIPGASIAIAYQGRLVYQRGYGMAVTETQTPVT 95

Query: 74  VNDRFHIGSDTKAFTAT-----LAGIL---VDRGAMAWTTTLGE-AFPELSPKMDPDFRR 124
              RF IGS +K+ TA        G L   ++R        L + A+P+ +  +D    +
Sbjct: 96  PQTRFRIGSISKSVTAMAMLKLFEGELPEALERRVFGPDGLLPDTAYPDFAQPLDRRALK 155

Query: 125 ITISQLLSHTSGIPADNAEFLELLAK-----SMFEEGNLDDLRYWTLQQWMSKPLPGQPG 179
           IT+  LL HT+G    + E L+ L        +    +  D+  + L+Q +    P    
Sbjct: 156 ITLRDLLQHTAGWGDSDYEPLDDLRHIAEVMKVKSPASAKDVIAYVLKQRLLDAAP---- 211

Query: 180 QQGQRFAYSNLGYTIAGAMIERVARKSWEELINEWIFDPMELKSAGLGSQATLGRV---- 235
             G  F Y N  Y + G +IE+ +   + + +   ++ P  +  A + +    GR     
Sbjct: 212 --GTEFFYDNFAYVVLGRIIEQRSGLPYAQAVQALVWHPAGVSDAAIAADGRAGRAAGEA 269

Query: 236 ----DAALGHVLVGEDIAKPFMAGPGDDNPQLIAPAGGANMSVLDFARWAGW-------- 283
               DA    V VGE        G G   PQ     G  + S +D    AGW        
Sbjct: 270 VYYDDARWPTVPVGE--------GEGAAAPQSY---GVHHFSSMDAT--AGWIASAADLV 316

Query: 284 ---NAGEGKRGPALLKPETLKLLHAPVIDMPHVQNPVPGTPTDGKYGLGWVTAK 334
              +A +G+  P LL+P+T+ L+      MP           D  YGLGWV  +
Sbjct: 317 QFVDAAQGRNRPGLLQPQTVALMKQRHPRMP-----------DNPYGLGWVLTR 359


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,301,596
Number of extensions: 59569
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,207,925
Effective search space: 370832975
Effective search space used: 370832975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)