BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0097.0009.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   246   5e-67
gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   164   4e-42

>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  246 bits (629), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 132/157 (84%), Positives = 142/157 (90%)

Query: 1   MDFLLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFAETGLVVTPILPGDSLLFVTGA 60
           MD LLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIF ETGLVVTPILPGDSLLFVTGA
Sbjct: 1   MDILLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60

Query: 61  IAATGAFDIHLMVLTLIVAAILGDSVNYQIGKAVGLKVFDKPGSRIFKREYLDKTHAFYE 120
           +AATGA+DI+LMVLTLIVAAILGDS NYQIGK +G+KVFDKP SRIFK+EYLDKTHAF+E
Sbjct: 61  LAATGAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFE 120

Query: 121 RHGGKTVIIARFAPIVRTFAPFVAGKNKRCIQGFFFF 157
           +HGGK +IIARFAPIVRTFAPFVAG        FF +
Sbjct: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLY 157


>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  164 bits (415), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 106/145 (73%), Gaps = 2/145 (1%)

Query: 1   MDFLLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFAETGLVVTPILPGDSLLFVTGA 60
           MD+L  L+D +VH+D++L  L   YG  ++ +LFLI+F ETGLVV P LPGDSLLF+ G 
Sbjct: 1   MDYLQ-LLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGT 59

Query: 61  IAATGAFDIHLMVLTLIVAAILGDSVNYQIGKAVGLKVFDKPGSRIFKREYLDKTHAFYE 120
             ATGA DI L++  L+VAA+ G+++NY IG  VG +V+     R    E L KTHAFYE
Sbjct: 60  FCATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTH-NYRWLNPEALRKTHAFYE 118

Query: 121 RHGGKTVIIARFAPIVRTFAPFVAG 145
           +HGGKT++IARF PIVRTFAPF+AG
Sbjct: 119 KHGGKTIVIARFTPIVRTFAPFIAG 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.336    0.150    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 464,533
Number of extensions: 17332
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 127 (53.5 bits)