BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0097.0004.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311082|ref|YP_003775174.1| transmembrane protein [Herbaspi...   153   5e-39
gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum ser...    54   5e-09

>gi|300311082|ref|YP_003775174.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  153 bits (386), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 80/100 (80%)

Query: 18  GCASLLAPPVNPGDTEDQVVARLGRPTAVYPDGNTHLLEYAPGPFGQYAYMARIGPDGRL 77
           GCASLL PPV PG+ EDQVVARLG PT VYPDGN  + EY  GPF QY YMARIGPD RL
Sbjct: 30  GCASLLQPPVQPGEPEDQVVARLGPPTNVYPDGNVRVFEYGAGPFSQYQYMARIGPDHRL 89

Query: 78  ISYEQVWTVQKFQSIKVDQATKNDVLRIVGRPTEVMRYAR 117
           ISYEQVWT++ F++I+  Q TK DVLR VGRPTEV RYAR
Sbjct: 90  ISYEQVWTIENFRAIRPKQDTKLDVLRRVGRPTEVTRYAR 129


>gi|300312390|ref|YP_003776482.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 175

 Score = 53.5 bits (127), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 32  TEDQVVARLGRPTAVYPDGN-THLLEYAPGPFGQYAYMARIGPDGRLISYEQVWTVQKFQ 90
           +E  V   +G+P  V+ DG     LEY  GP G   +M  IG  G LI Y+QV T + F 
Sbjct: 49  SEADVRDVMGQPDTVWDDGQGARTLEYPKGPQGIRTWMFSIGASGTLIDYQQVLTQEHFD 108

Query: 91  SIKVDQATKNDVLRIVGRPTEVMRYAR 117
           +I+    T   + R  GRP  V+++ R
Sbjct: 109 TIRAG-MTAEQIRRQFGRPRSVVQFGR 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 430,041
Number of extensions: 18294
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)