BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0097.0001.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidylt...   224   5e-60

>gi|300311084|ref|YP_003775176.1| polyribonucleotide
           nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 712

 Score =  224 bits (570), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 120/128 (93%), Gaps = 3/128 (2%)

Query: 1   VIGKGGAVIRALTEETGTQIDISDEGVVTIASVDAGAGQEAKRRIEELTASVEVGKVYEG 60
           VIGKGGAVIRALTEETGTQIDISDEGVVTIASVDA AGQEAKRRIEELTASVEVGK+YEG
Sbjct: 573 VIGKGGAVIRALTEETGTQIDISDEGVVTIASVDASAGQEAKRRIEELTASVEVGKIYEG 632

Query: 61  TVLKLLDFGAIVQVLPGKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDXEGQQVR 120
           TVLKLLDFGAIVQVLPGKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETD  G   R
Sbjct: 633 TVLKLLDFGAIVQVLPGKDGLLHISQIANERVNAVADYLKEGQQVRVKVLETDDRG---R 689

Query: 121 VKVLPKSA 128
           +K+  K+A
Sbjct: 690 LKLSMKAA 697


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,922
Number of extensions: 21752
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)