BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0015.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/Cbi...   139   7e-35

>gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  139 bits (351), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 81/106 (76%), Gaps = 3/106 (2%)

Query: 1   MPIAAALKDGDLAAARALTGRIVSRDTSQSQETDLAKAAVESLLENGNDAVFGTLFWFAV 60
           +PIA AL  G+LA AR LT  IVSRDT  + E +LAKA VESLLENGNDAVFGTLFWF +
Sbjct: 106 LPIAQALGAGELAQARRLTAWIVSRDTRSASEQELAKAGVESLLENGNDAVFGTLFWFLL 165

Query: 61  AGGPGALLFRLANTLDAMWGYRTPRFLAFGCAAAAT---WCWCPTK 103
           AGGPGALLFRL+NTLDAMWGYR  RFL FG AAA       WCP +
Sbjct: 166 AGGPGALLFRLSNTLDAMWGYRNARFLYFGWAAARIDDALNWCPAR 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.131    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,993
Number of extensions: 12364
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)