BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0013.p
         (481 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311957|ref|YP_003776049.1| oxygen-insensitive nitroreducta...   311   1e-85
gi|300311958|ref|YP_003776050.1| cobyrinic acid A,c-diamide synt...   198   9e-52

>gi|300311957|ref|YP_003776049.1| oxygen-insensitive nitroreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  311 bits (796), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/224 (69%), Positives = 176/224 (78%), Gaps = 10/224 (4%)

Query: 256 HRYDQADIDTVYRVIAERRDIRHFLPDGIDPALLQRLLEAAHLGPSVGFMQPWRFIRTNY 315
           HRY Q +I+ +YRVI ERRD+RHFLPD + P LLQRLL+AAH  PSVGFMQPWRF+R   
Sbjct: 4   HRYAQPEIEAIYRVIRERRDMRHFLPDAVAPELLQRLLQAAHHAPSVGFMQPWRFLR--- 60

Query: 316 IITDIRXGPHRSRRDAIHALVEEERILTAQALHEREDEFMRLKVEGIRECGELLVAALMD 375
               IR     + R  IHALVE+ERI TAQAL +RE EFMRLKVEGI ECGE+LVAALMD
Sbjct: 61  ----IRSA---ALRRQIHALVEQERIATAQALGQREQEFMRLKVEGILECGEVLVAALMD 113

Query: 376 DRERHVFGRRTLPEMDLASVACAIQNMWLAARAEGIGMGWVSLFDAGKLAALLEMPAGAK 435
            RERHVFGRRT+P+MDLAS++CA+QNMWLAARAEG+GMGWVSLFD   LA LL MP GA 
Sbjct: 114 QRERHVFGRRTMPQMDLASLSCALQNMWLAARAEGLGMGWVSLFDPAALAQLLRMPDGAA 173

Query: 436 PVAVICLGHVKEFYARPMLEQEGWAKRQSLDDLVFSDAWGNKEK 479
           PVAV+CLGHV  FY +PMLEQE WA RQ L DLVF D W   E+
Sbjct: 174 PVAVLCLGHVPAFYDKPMLEQEQWAARQPLADLVFDDHWPAGEE 217


>gi|300311958|ref|YP_003776050.1| cobyrinic acid A,c-diamide
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  198 bits (503), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 124/172 (72%), Gaps = 3/172 (1%)

Query: 1   VRVFKTGPDFLDPTILERASGNPVYQLDLWMMGVAECRRLLHDAAQQADLILVEGVMGLF 60
           V VFKTGPDFLDP +LE+ASG PV  LDLWM G    RR +  AA Q+D++LVEGVMGL+
Sbjct: 40  VTVFKTGPDFLDPMVLEQASGQPVANLDLWMAGQDHVRRQVALAAAQSDVLLVEGVMGLY 99

Query: 61  DGEPCSADLAELMKIPAVAVVDVAGVAQTLGAIGYGLAHYRPGFPLQGLFANGVASLRHE 120
           DGEP SADLA+L+ IP VAV++  G+ QT+GA+  GL  YRP     G+ ANGVAS RH 
Sbjct: 100 DGEPSSADLAQLLGIPVVAVINARGMGQTIGALAQGLLAYRPELKFAGVLANGVASPRHA 159

Query: 121 EMLRQGMPH---GINYLGGMPRNLQFKLPERHLGLVPAAEVSDLXPRGDAAA 169
           +MLRQG+ H    +  L G+ R+LQF LPERHLGLV A E++DL  R DA A
Sbjct: 160 QMLRQGLQHARPSVPLLSGLQRDLQFALPERHLGLVAAPEIADLDARLDAVA 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,611,697
Number of extensions: 72010
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 2
Length of query: 481
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,198,455
Effective search space: 469794360
Effective search space used: 469794360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)