BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0010.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311959|ref|YP_003776051.1| cob(I)alamin adenosyltransferas...   244   6e-66
gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirill...   202   4e-53

>gi|300311959|ref|YP_003776051.1| cob(I)alamin adenosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  244 bits (623), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 113/124 (91%), Positives = 120/124 (96%)

Query: 164 DFLGGHANCDFHVVGSGYTWDTQDRDADMKTAAHGWAEAVRMIRDPSYDMVILDEMNIVL 223
           DFLGGHANCDFHVVG+GYTWDTQDR+ADM+TAA GWAEAVRMI+DPSYDMVILDE+NIVL
Sbjct: 77  DFLGGHANCDFHVVGAGYTWDTQDREADMRTAARGWAEAVRMIQDPSYDMVILDELNIVL 136

Query: 224 KYQYLDLQEVLDVFAARREMLHIVVTGRHAPDALIELADLVSEMRPLKHPYKEQGIKAQK 283
           KYQYLDL EVL VFAARREMLHIVVTGRHAP+ALIE ADLVSEMRPLKHPYKEQG+KAQK
Sbjct: 137 KYQYLDLDEVLRVFAARREMLHIVVTGRHAPEALIEQADLVSEMRPLKHPYKEQGVKAQK 196

Query: 284 GVEF 287
           GVEF
Sbjct: 197 GVEF 200


>gi|300311960|ref|YP_003776052.1| G3E family GTPase [Herbaspirillum
           seropedicae SmR1]
          Length = 377

 Score =  202 bits (513), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/204 (57%), Positives = 134/204 (65%), Gaps = 8/204 (3%)

Query: 1   VDHVLIETSGLALPTAVMESLQTPALAAHFILDATLAVVDTPLLLDNRFRRGSGADGAVA 60
           +DHVLIETSGLALP+AVME LQ   +A HF+LDATLAVVDTPLLL++ F        A A
Sbjct: 105 IDHVLIETSGLALPSAVMEVLQGAEMARHFVLDATLAVVDTPLLLEDAFASADAVGAATA 164

Query: 61  DMFERQLEYADVVVLNKIDDLNEDLLLDAEHRVRACAPNVRFLELAYKAQLDIRLALGLR 120
            +F +QLE ADVVVLNKID + E  LL AE  VRA APNVRFLELAY A+LDIRLALGLR
Sbjct: 165 QLFRQQLECADVVVLNKIDGMEEAPLLQAEQAVRALAPNVRFLELAYGARLDIRLALGLR 224

Query: 121 LHQPTLQAHQHTYTHVRMPGAEASVLSDQGRLNGHAHSGLGAXDFLGGHANCDFHVVGSG 180
           LHQ     H H YT V MPG  A V  DQ R NGH HSGLGA    G   +  FH    G
Sbjct: 225 LHQAGATVHHH-YTPVSMPGERAQVAPDQRRFNGHVHSGLGAHSH-GLSTHKHFHEQDPG 282

Query: 181 YTWDTQDRDADMKTAAHGWAEAVR 204
           +   T      +++ AH  AE +R
Sbjct: 283 WQSFT------LRSLAHQDAERLR 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 889,799
Number of extensions: 35510
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)