BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0004.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...   169   5e-44

>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  169 bits (428), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/96 (92%), Positives = 92/96 (95%)

Query: 1   VVRLHSGDPAIYGATAEQMRRLEALGIAYEVVPGVSSFTAAASAVSAELTKPEVSQSVIL 60
           VVRLHSGDPAIYGATAEQMRRL+ALGIAYEVVPGVSSFTAAA+AVSAELTKPEVSQSVIL
Sbjct: 76  VVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAVSAELTKPEVSQSVIL 135

Query: 61  TRVSGRASAVPELESIARLAEHQATMCIFLSGPHCK 96
           TRVSGRASAVPE ESIA LA H+ATMCIFLSGPH K
Sbjct: 136 TRVSGRASAVPESESIASLAAHRATMCIFLSGPHLK 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.128    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 291,519
Number of extensions: 7523
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)