BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0002.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD tra...   279   2e-76
gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbasp...    99   4e-22

>gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  279 bits (714), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/226 (66%), Positives = 171/226 (75%), Gaps = 11/226 (4%)

Query: 1   VKAALTMLLCGERIDKAEVSLPDGKHYLLVPIQDVQKLDDKRIRAEVLKDGGDDPDNTHG 60
           V+AAL  LL G  + + EVSLPDG+HYL VP+Q V+ +     +A+VLKDGGDDPDNTHG
Sbjct: 36  VRAALYRLLAGVTLQETEVSLPDGRHYLCVPVQAVEMIAPDIAQADVLKDGGDDPDNTHG 95

Query: 61  ATIFAEVARNDTGDIRFKAASGVGTATRPGLRVAVGEAAINPVPRQMMRLAVAEVLEELN 120
           ATIFA+V RN +G++RF A  GVGTAT PGLRVAVGE AINPVPR MMR AVAEVL EL 
Sbjct: 96  ATIFAQVRRNQSGEVRFFAGQGVGTATMPGLRVAVGEPAINPVPRAMMRAAVAEVLAELR 155

Query: 121 VNGE--TGFDLAIGCEDGQKIAQKTFNPRLGIVGGISILGTSGIVEPMSLASWIASIEVY 178
             GE   GFDL IGC +G  IA KTFNP+LGIVGGISILGTSGIVEPMS+ASWIASIEVY
Sbjct: 156 -PGEPACGFDLTIGCREGVSIAPKTFNPKLGIVGGISILGTSGIVEPMSMASWIASIEVY 214

Query: 179 IRVALADDSKPNGVATCVAYLPGKIGRTFAXRETMDKLDLPNGMSV 224
           IRVALA  +  +     VAYLPGKIGR F  +E    L LP+  SV
Sbjct: 215 IRVALAACAPGDA----VAYLPGKIGRVFVAQE----LGLPDKRSV 252



 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 34/48 (70%)

Query: 239 QWDLNYLMQLWRAIEARIAALAQTRVPAVKRVEVRLFDLDGNLLGGRA 286
           Q D     +LW  IEARIA LAQ RVP+V R+EVRLFDL+G+ LG  A
Sbjct: 349 QQDAALARRLWCEIEARIATLAQARVPSVARIEVRLFDLEGHQLGAGA 396


>gi|300311210|ref|YP_003775302.1| ribonuclease E protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1062

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 210 RETMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIE 253
           RETMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIE
Sbjct: 151 RETMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIE 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 940,890
Number of extensions: 40391
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)