BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0096.0001.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD tra...   149   9e-38

>gi|300311965|ref|YP_003776057.1| cobalamin biosynthesis CbiD
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  149 bits (376), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/119 (68%), Positives = 94/119 (78%), Gaps = 5/119 (4%)

Query: 1   LPEARSVQIANFLGDALDFTQSALAEQGAELDVLWLAGHPGKLAKVLDGVWDTHSSKSNM 60
           LP+ RSVQIANFLGDALDFT+ ALAE G  L +LWLAGHPGKLAKVLDGVWDTHSSKSNM
Sbjct: 246 LPDKRSVQIANFLGDALDFTEQALAEAGRTLPLLWLAGHPGKLAKVLDGVWDTHSSKSNM 305

Query: 61  AMGGVARVASEL-AAEFG--FSAALIAEIESANTVEAAIERLRQESGSAA--LWRAIDS 114
           AM GVARVA E+ AAE G  F A L+ +++ ANTVEA IE +RQ+  + A  LW  I++
Sbjct: 306 AMQGVARVAEEMNAAESGVLFDAPLLQQMKEANTVEAIIELVRQQDAALARRLWCEIEA 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 442,451
Number of extensions: 15901
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)