BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0019.p
         (511 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   164   1e-41

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 200/404 (49%), Gaps = 72/404 (17%)

Query: 1   VRRQKWFTQLRDELNDKLQAQRDIIIQPRIPMIRVAVFGFSRGAIEARSFCYWLHAALEE 60
           VRR   +     +L   +++ +  ++Q     I V+VFGFSRGA EAR+ C+WLH     
Sbjct: 199 VRRLAMYKTFMQKLATAVKSSQRKVVQ-----INVSVFGFSRGAAEARACCHWLHELFTP 253

Query: 61  KN---TLAGMPIQINFLGLFDSVASIGIADSASKTTLLKFADGHFSWAAETLTALPSLVK 117
                 LAG+PI+I FLG+FD+VA++GI D     T + F  GH +WA +T  ++P  V+
Sbjct: 254 SGGAFELAGIPIRIGFLGVFDTVAAVGIGD----VTPVTF--GHMAWADKT-QSVPPAVE 306

Query: 118 KTVHYIAAHEQRMNFPITRVKGGNVHEVLYPGVHSDVGGGYCPKEQGRGI-TVGQM--VS 174
           +  H++A HEQR +FP+    G     V YPG+HSD+GGGY P EQG+ + + G+   +S
Sbjct: 307 QCAHFVALHEQRASFPLESSTGWT--NVGYPGMHSDIGGGYFPGEQGKSMPSWGKSPHLS 364

Query: 175 QVPLLHMHKIARLAGVPLVTYRQMPSD--LQADFALSPELAANWNAYMAAWLRAGTPEEA 232
           Q+PL+ MH  A  AGVPL T  ++ +D  L A +A  P L  ++N ++            
Sbjct: 365 QIPLIDMHFTALKAGVPLWTTGEINADPSLSASYATDPRLIKSYNDWL------------ 412

Query: 233 ATDGQKSVEPSANDKSGEDPATNNFGGTYDQHIQKHMSLYYRFRSRWL----GRMAHLPA 288
           AT+G K+                   G+  ++ + H   Y R+R        G M     
Sbjct: 413 ATNGIKA-------------------GSIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRF 453

Query: 289 CQRATPQEQQDMVSYDDLFKGDMQLLAERA------KGGRPRQ---RDVYGDDIKLYGPG 339
            Q A   +++DM+  D      ++   ERA      + G+  Q   R V      L GP 
Sbjct: 454 YQDAGTSDKKDMLEADVELGKMIRDWRERASLNLDQRMGQMAQKYVRRVSPLTGMLMGPS 513

Query: 340 NEQIANQTQ----LQRADAR--AGGIALLEEQVHDSLAGFYLAG 377
            +++  Q +    +  +D    A  + L E+ VHDS AGF + G
Sbjct: 514 KDRLTAQEKKFYDIMCSDPMPPAACVTLFEDYVHDSRAGFRVMG 557


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,740,962
Number of extensions: 77339
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 422
Effective length of database: 1,198,455
Effective search space: 505748010
Effective search space used: 505748010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)