BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0015.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755...    56   2e-09

>gi|300310090|ref|YP_003774182.1| hypothetical protein Hsero_0755
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 1   LQPISPDSPIGGDLTYDDDFLAIKEE-------------VAKFSDIDDTLIVDSAERLLK 47
           L PI+ ++P G DL++  D  AI E              V    + D   +     RLL+
Sbjct: 23  LNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGEWVIDIKEADWPFVEQHCARLLE 82

Query: 48  HSAKDVRPAVYYVYGRLRQEGAEGLASGLELLSALVDRFGDQLLPRRAE----SRKVALE 103
             +KD+R AV+Y     +  G  GL  G  L++ L DRF D + P+  E     R   L 
Sbjct: 83  GRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDRFWDNMYPQSEEGDHDQRVGNLT 142

Query: 104 WLTGATFA 111
           WL   + A
Sbjct: 143 WLLARSVA 150


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 673,732
Number of extensions: 21671
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)