BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0095.0013.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033...    98   6e-22
gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745...    98   8e-22

>gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033
           [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score = 98.2 bits (243), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 20/266 (7%)

Query: 8   HDILRYYEAEMRYLREAGKEFAQAHPDRARMLNIDRVGERDPHVERLFEGFAFLMGRLRH 67
            ++L YYE E+ +LR   ++F++ +P  A  L +      DPH+ER+ + +A L  R+  
Sbjct: 2   QELLPYYERELSFLRRYSRDFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVSK 61

Query: 68  KLDDELPELTEGLVSMLWPHYLRMIPSLSI--LELTPEYGVLQRHEVLEAGLEAVSDPIG 125
           +LDD+ P+ TE L  +L+PHYLR  PS SI  ++       L    ++  G    + P+ 
Sbjct: 62  RLDDDYPQFTEALFEVLYPHYLRPFPSCSIARMDCAESAEQLTSATIIPRGTTLSTRPV- 120

Query: 126 EESVECIYRTTQDVDLYPLKLIEA----------APLTRDDGRSVIRLRLAVQG-QAQRE 174
            + V C ++T  DV + P+ L  A          A +      S + + +A  G Q    
Sbjct: 121 -KGVVCQFQTVYDVPVAPICLTHAVFSPIIDAPEAVVLPTSVTSSLSIGIATAGEQLALA 179

Query: 175 LLTVPRLRLYLNADRPVALALYKALTAAPLAVQVRVPGHPAHAPGAPQLMPDLRLEPAGF 234
            L +  LR++++ +     AL  +L     A  + +PG     P     +P + L   GF
Sbjct: 180 KLDLVSLRVFIDGEASFCAALRDSLFMRSAAAWIELPGSRRWVP-----LPAIPLAEVGF 234

Query: 235 AADQRLWPKADNAFGGYQLLLEYFXL 260
           A +  L      +   Y+ L EYF  
Sbjct: 235 ADEDALIDFPSQSHPAYRHLTEYFAF 260


>gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745
           [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score = 97.8 bits (242), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 20/266 (7%)

Query: 8   HDILRYYEAEMRYLREAGKEFAQAHPDRARMLNIDRVGERDPHVERLFEGFAFLMGRLRH 67
            ++L YYE E+ +LR   +EF++ +P  A  L +      DPH+ER+ + +A L  R+  
Sbjct: 2   QELLPYYERELSFLRRYSREFSERYPKIAGSLLMSGEVCEDPHIERMIQSYALLNARVSK 61

Query: 68  KLDDELPELTEGLVSMLWPHYLRMIPSLSI--LELTPEYGVLQRHEVLEAGLEAVSDPIG 125
           +LDD+ PE TE L  +L+PHYLR  PS SI  ++       L    V+  G    +  + 
Sbjct: 62  RLDDDYPEFTEALFEVLYPHYLRPFPSCSIARMDYAASAAQLTTASVIPRGTALTTRQV- 120

Query: 126 EESVECIYRTTQDVDLYPLKLI-----------EAAPLTRDDGRSVIRLRLAVQGQAQRE 174
            + V C ++T  DV + P++L            EA  L      S+  +      Q    
Sbjct: 121 -KGVACKFQTAYDVTVAPIRLSHATFAPIIEAPEAVTLPTSVSSSLSIVIDTTSEQLTLA 179

Query: 175 LLTVPRLRLYLNADRPVALALYKALTAAPLAVQVRVPGHPAHAPGAPQLMPDLRLEPAGF 234
            L +  LR++++ +     AL  +L    +A  V +P       G    +  + L   GF
Sbjct: 180 QLGLSSLRVFIDGEASFCAALRDSLFMRSVAAWVELPNS-----GRWTALRKVPLAEVGF 234

Query: 235 AADQRLWPKADNAFGGYQLLLEYFXL 260
           A D  L      +   Y+LL EYF  
Sbjct: 235 AEDDALIDFPARSHPAYRLLTEYFCF 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,143
Number of extensions: 33276
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)